View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16876_low_2 (Length: 491)
Name: NF16876_low_2
Description: NF16876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16876_low_2 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 90 - 379
Target Start/End: Original strand, 19910065 - 19910356
Alignment:
| Q |
90 |
aaaatttataaacttacccggccaatccacaaataaaaggnnnnnnnn--cctttaaataaggtctttattttgccaaggaacccttcaatggttcatct |
187 |
Q |
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| T |
19910065 |
aaaatttataaacttacccggccagtccacaaataaaaggacaaaaaaaacctttaaataaggcctttattttgccaagaaatccttcaatggttcatct |
19910164 |
T |
|
| Q |
188 |
tcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcagatataatgagacctattatctattccatgtctttgatttaagaaat |
287 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19910165 |
tcattctcaaattcaaaaattggagaagaaaaaacaataagttttaaatctcaggtataatgagacctattatctattccatgtc-ttgatttaagaaat |
19910263 |
T |
|
| Q |
288 |
gcaccgagaagacctcaactaagttctagtgatccttttatcaaacaatta-gaatgcaaaaaatagcattcatcaaagtgaatgacttgtag |
379 |
Q |
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| T |
19910264 |
gcatagagaagacctcaactaagttctcgtgatccttttatcatacaattataaatgcaaaaaatagcattcatcaaagtgaatgacttgtag |
19910356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 1661205 - 1661534
Alignment:
| Q |
19 |
agactcatccatgctcaactaccatatctacatcccaactaaatttatcaatgcagccagaaaaaatatggaaaatttataaacttacccggccaatcca |
118 |
Q |
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||||||| ||||||||||| ||| |||||||| | || || ||| |||||||| || | ||||||| |||||||||||| |||||||| || ||| |||| |
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| T |
1661205 |
agactcaaccatgctcaaccaccctatctacagctcagctcaatctatcaatgtagtccgaaaaaa-atggaaaatttaaaaacttactcgaccagtcca |
1661303 |
T |
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| Q |
119 |
caaataaaaggnnnnnnnn---cctttaaataaggtctttattttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaag |
215 |
Q |
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| T |
1661304 |
caaataaaagcacaaaagaaaaccttcaaataaggcctttattttgccaaggaagcctgtaatggtacaccataattgttaaattcaaaaatgggaggag |
1661403 |
T |
|
| Q |
216 |
aaaaaacaataagttttaaatttcagatataatgagacctattatctattccatgtctttgatttaagaaatgcaccgagaagacctcaactaagttcta |
315 |
Q |
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| T |
1661404 |
aaaaaacaataagttttaaattacaggcataatgggagctattatctattccatgtc-ttgatttaagaaatgcactgagaagacctcaactaagtttta |
1661502 |
T |
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| Q |
316 |
gtgatccttttatcaaacaattagaatgcaaa |
347 |
Q |
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| T |
1661503 |
atgatccttttatcaaacagttagaatgcaaa |
1661534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 392 - 468
Target Start/End: Original strand, 19910343 - 19910419
Alignment:
| Q |
392 |
tgaatgacttgtagatgatactaaattgggtactgccaaagcattgcatttccatttctccagttttgaaatctctc |
468 |
Q |
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| T |
19910343 |
tgaatgacttgtagatgatactaaattggacactgccaaaacattgcatttccatttctcccgttttgaaatctctc |
19910419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 55877858 - 55877810
Alignment:
| Q |
299 |
acctcaactaagttctagtgatccttttatcaaacaattagaatgcaaa |
347 |
Q |
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| T |
55877858 |
acctcaactaaattcaagcgatccttttatcatacacttagaatgcaaa |
55877810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 21 - 468
Target Start/End: Complemental strand, 19964075 - 19963630
Alignment:
| Q |
21 |
actcatccatgctcaactaccatatctacatcccaactaaatttatcaatgcagccagaaaaaatatggaaaatttataaacttacccggccaatccaca |
120 |
Q |
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||||| |||||||||| ||| |||||| | | || || ||| |||||||||| |||||||||| ||| |||||||||||||||||||||| | |||||| |
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| T |
19964075 |
actcaaccatgctcaatcaccctatctatagctcagctcaatctatcaatgcaaccagaaaaaa-atgaaaaatttataaacttacccggcgagtccaca |
19963977 |
T |
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| Q |
121 |
aataaaaggnnnnnnnnc---ctttaaataaggtctttattttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaa |
217 |
Q |
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||||||||| ||| |||||||| ||||||||||||||||||| || ||||||| || | ||||||| ||||||||||||||||| |||| |
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| T |
19963976 |
aataaaaggacaaaagaaaatcttcaaataaggcctttattttgccaaggaactctgcaatggtacaccgtcattgttaaattcaaaaattggaggagaa |
19963877 |
T |
|
| Q |
218 |
aaaacaataagttttaaatttcagatataatgagacctattatctattccatgtctttgatttaagaaatgcaccgagaagacctcaactaagttctagt |
317 |
Q |
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| T |
19963876 |
aaaacaataagttttaaatttcaggcataatgagagctattatctattccatatc-ttgatttaagaaatgcaaagagaagacctcgactaagttctaat |
19963778 |
T |
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| Q |
318 |
gatccttttatcaaacaattagaatgcaaaaaatagcattcatcaaagtgaatgacttgtagtaatnnnnnnnntgaatgacttgtagatgatactaaat |
417 |
Q |
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||||||||| ||||||| ||| ||||| ||| ||||||||||| ||||||||||||||||||| | |||||||| | || |||||||||||| |
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| T |
19963777 |
gatccttttgtcaaacagttaaaatgc--aaagtagcattcatcgaagtgaatgacttgtagtactaacaaaagtgaatgac-tataaatgatactaaat |
19963681 |
T |
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| Q |
418 |
tgggtactgccaaagcattgcatttccatttctccagttttgaaatctctc |
468 |
Q |
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|||| ||||||||||||| |||| | |||||||| |||||||||| |||| |
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| T |
19963680 |
tgggcactgccaaagcatcacattcctatttctcctgttttgaaatatctc |
19963630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 48 - 378
Target Start/End: Complemental strand, 25490472 - 25490145
Alignment:
| Q |
48 |
acatcccaactaaatttatcaatgcagccagaaaaaata--tggaaaatttataaacttacccggccaatccacaaataaaaggnnnnnnnncctttaaa |
145 |
Q |
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|||| |||||| ||| |||||||||||||| ||||| | |||||||||| | ||||||||| |||||||| |||||||| | | || ||| |
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| T |
25490472 |
acatgccaactcaatctatcaatgcagccacaaaaagaaactggaaaatttgtgaacttacccaaccaatccataaataaaacgacaaaaaac-ttcaaa |
25490374 |
T |
|
| Q |
146 |
taaggtctttattttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcagatat |
245 |
Q |
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|||| ||||||||| ||||||||||| |||||| |||| ||||||||||||| ||||||| ||||||||||||| |||||||||||| | | || |
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| T |
25490373 |
taagacctttatttttccaaggaacccgctaatggtacatcctcattgtcaaatttaaaaattcgagaagaaaaaaccgtaagttttaaatctaaagcat |
25490274 |
T |
|
| Q |
246 |
aatgagacctattatctattccatgtctttgatttaagaaatgcaccgagaagacctcaactaagttctagtgatccttttatcaaacaattagaatgca |
345 |
Q |
| |
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| T |
25490273 |
aatgagagccattacctatttcatgtc-ttgatttaa-aattgcatagagaagacctcaacttagttctagtgatccttttatcaaacggttataatgc- |
25490177 |
T |
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| Q |
346 |
aaaaatagcattcatcaaagtgaatgacttgta |
378 |
Q |
| |
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||| |||| ||||||||||||||||||||||| |
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| T |
25490176 |
-aaagtagctttcatcaaagtgaatgacttgta |
25490145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 290
Target Start/End: Original strand, 13194 - 13326
Alignment:
| Q |
157 |
ttttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcagatataatgagaccta |
256 |
Q |
| |
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||||||||||||||||| ||| || | || ||||||||| ||||| ||||||||||||||| ||| | |||||||||||||| ||||| ||| || |
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| T |
13194 |
ttttgccaaggaaccctgcaaaggaacttcctcattgtcagattcagaaattggagaagaaacaaccttgagttttaaatttcatgcataataggactta |
13293 |
T |
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| Q |
257 |
ttatctattccatgtctttgatttaagaaatgca |
290 |
Q |
| |
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||| || ||||||||| | ||||||| ||||||| |
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| T |
13294 |
ttacctcttccatgtc-tagatttaataaatgca |
13326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 7881508 - 7881563
Alignment:
| Q |
138 |
cctttaaataaggtctttattttgccaaggaacccttcaatggttcatcttcattg |
193 |
Q |
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|||| |||||||| |||||||||||||||||||||| ||||||| |||| |||||| |
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|
| T |
7881508 |
ccttcaaataaggcctttattttgccaaggaaccctgcaatggtacatcgtcattg |
7881563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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