View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16876_low_3 (Length: 389)
Name: NF16876_low_3
Description: NF16876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16876_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 36755839 - 36756193
Alignment:
| Q |
10 |
agatgaacgggataaattaaagaaaactttggacgaattaagcgtagaaaattcctagaataatgtcaaattactgatcgaagaagataatcactgggtt |
109 |
Q |
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| T |
36755839 |
agatgaacgggataaattaaagaaaactttggacgaattaagcgtagaaaattccaagagtaatgtcaaattactgatcgaagaagataatcactgggtt |
36755938 |
T |
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| Q |
110 |
tcaggtgcatcaactgtatcttttgtgcatggatgatatgtggacatcatactctactgagatcggtggtagcggtgatggtggggtgatgccccattaa |
209 |
Q |
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| T |
36755939 |
tcaggtgcatcaactgtaccttttgtgcatcgatgatatgtggacatcatattttactgagatcggtggtagcggtgat-----ggtgatgccccattaa |
36756033 |
T |
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| Q |
210 |
tctgggtatggagaagaatcatgaaaaagttaaggaattgggatttgaaacggcactccaaaccagcctggtggattgcattcgtacgaactttcttcgt |
309 |
Q |
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| T |
36756034 |
tctgggtatggagaagaatcatgaaaaagttaaggaattgggatttgaaacggcactccaaaccagcctggtggattgcattcgtacgaactttcttcgt |
36756133 |
T |
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| Q |
310 |
gtcattggacaaaagtttagcgatattgaaaaggnnnnnnnngattttgttggagagatt |
369 |
Q |
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| T |
36756134 |
gtcattggacaaaagtttagcgatattgaaaaggaaaaaaaagattttgttggagagatt |
36756193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 214 - 343
Target Start/End: Original strand, 36748700 - 36748832
Alignment:
| Q |
214 |
ggtatggagaagaatcatgaaaaagttaaggaattgggatttgaaacggcactccaaaccagcctggtggattgcattcgtacgaact---ttcttcgtg |
310 |
Q |
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| T |
36748700 |
ggtatggagaagtatcatgaaaaagttaaggaattgggatttgaaacggcactccaaaccagtctggtggacagcactcataagaactttcttcttcgtg |
36748799 |
T |
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| Q |
311 |
tcattggacaaaagtttagcgatattgaaaagg |
343 |
Q |
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| T |
36748800 |
tcattgggcaaaagtttagcgatattgaaaagg |
36748832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 218 - 343
Target Start/End: Original strand, 36767170 - 36767298
Alignment:
| Q |
218 |
tggagaagaatcatgaaaaagttaaggaattgggatttgaaacggcactccaaaccagcctggtggattgcattcgtacgaact---ttcttcgtgtcat |
314 |
Q |
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| T |
36767170 |
tggaaaagtatcatgaaaaagtaaaggagttgggatttgaaaaggcactccaaaccagcctggaggattgcattcgaatgacctttcttcttcgtgtcat |
36767269 |
T |
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| Q |
315 |
tggacaaaagtttagcgatattgaaaagg |
343 |
Q |
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| T |
36767270 |
tgggaaaaagtttagcgatattgaaaagg |
36767298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 36756226 - 36756325
Alignment:
| Q |
10 |
agatgaacgggataaattaaagaaaactttggacgaattaagcgtagaaaattcctagaataatgtcaaattactgatcgaagaagataatcactgggtt |
109 |
Q |
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| T |
36756226 |
agatgaatgggataaattaaagaaaactttgaacgaattaagcgtagaaaattgcaagagtaatgtcaaattactgatcaaataagataatcaccgggtt |
36756325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 36748891 - 36748999
Alignment:
| Q |
10 |
agatgaacgggataaattaaagaaaactttggacgaattaagcgta---------gaaaattcctagaataatgtcaaattactgatcgaagaagataat |
100 |
Q |
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| T |
36748891 |
agatgaatgggataaattaaagaaaactttggacgaattaaacgtattaaacgtagaaagttccaagagtaatgtcaaattacagatcaaagaagataat |
36748990 |
T |
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| Q |
101 |
cactgggtt |
109 |
Q |
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| T |
36748991 |
cactgggtt |
36748999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 36767357 - 36767411
Alignment:
| Q |
10 |
agatgaacgggataaattaaagaaaactttggacgaattaagcgtagaaaattcc |
64 |
Q |
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| T |
36767357 |
agatgaacgggataatttaaagaaatctttggacgaattaagcgtggaaagttcc |
36767411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 36748608 - 36748661
Alignment:
| Q |
136 |
gcatggatgatatgtggacatcatactctactgagatcggtggtagcggtgatg |
189 |
Q |
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| T |
36748608 |
gcatggatgatatgtggacatcattttttactgagatcagtgggagaggtgatg |
36748661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 36767050 - 36767103
Alignment:
| Q |
136 |
gcatggatgatatgtggacatcatactctactgagatcggtggtagcggtgatg |
189 |
Q |
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| T |
36767050 |
gcatggatgatatgtggacatcattttttactgagatcagtggcagtggtgatg |
36767103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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