View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16876_low_5 (Length: 366)

Name: NF16876_low_5
Description: NF16876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16876_low_5
NF16876_low_5
[»] chr2 (3 HSPs)
chr2 (19-358)||(20578848-20579180)
chr2 (19-121)||(20576151-20576253)
chr2 (130-166)||(553774-553810)
[»] chr1 (4 HSPs)
chr1 (132-166)||(43907694-43907728)
chr1 (139-200)||(19568068-19568129)
chr1 (130-166)||(42414174-42414210)
chr1 (136-220)||(43986909-43986993)
[»] chr8 (1 HSPs)
chr8 (129-197)||(42693644-42693712)
[»] chr3 (2 HSPs)
chr3 (135-175)||(12735669-12735709)
chr3 (132-175)||(32579708-32579751)
[»] chr7 (2 HSPs)
chr7 (130-172)||(19721238-19721280)
chr7 (139-175)||(19888564-19888600)
[»] scaffold0464 (1 HSPs)
scaffold0464 (135-175)||(7221-7261)
[»] chr6 (2 HSPs)
chr6 (130-166)||(6936032-6936068)
chr6 (139-175)||(14748578-14748614)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 20578848 - 20579180
Alignment:
Q  19 agagatacgatatggtcatggttaagaagcagtctttttgaagagaataaatgttggtgacttatgcttggattcatggttaagctctgaaggtgacatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20578848 agagatacgatatggtcatggttaagaagcagtctttttgaagagaataaatgttggtgacttatgcttggattcatggttaagctctgaaggtgacatt 20578947  T
Q  119 ttgcgaaacaaggatcagagattagggttttccatgatttgcaaacacgtttcaatttcagtagggatctcactggaagccttaagaggatctgaaagat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20578948 ttgcgaaacaaggatcagagattagggttttccatgatttgcaaacacgtttcaatttcagtagggatctcactggaagccttaagaggatctgaaagat 20579047  T
Q  219 gacatcgtccggtaagacgggcgatggtcgccagtgaagtaaactgtctctcattgaattttgaatttgaggatatgtgctgtgaattgattgcagatga 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  20579048 gacatcgtccggtaagacgggcgatggtcgccagtgaagtaaactgtctctca-------ttgaatttgaggatatgtgctgtgaattgattgcagatga 20579140  T
Q  319 aagttaaggttggggataaactaggttttgtttgatgatg 358  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  20579141 aagttaaggttggggataaacgaggttttgtttgatgatg 20579180  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 20576151 - 20576253
Alignment:
Q  19 agagatacgatatggtcatggttaagaagcagtctttttgaagagaataaatgttggtgacttatgcttggattcatggttaagctctgaaggtgacatt 118  Q
    |||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  20576151 agagatacaatctgctcatggttaagaagcagtctttttgaagagaataaatgttggtgacatatgcttggattcatggttaagctctgacggtgacatt 20576250  T
Q  119 ttg 121  Q
    |||    
T  20576251 ttg 20576253  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 553810 - 553774
Alignment:
Q  130 ggatcagagattagggttttccatgatttgcaaacac 166  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  553810 ggatcagagatgagggtgttccatgatttgcaaacac 553774  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 43907728 - 43907694
Alignment:
Q  132 atcagagattagggttttccatgatttgcaaacac 166  Q
    |||||||||||||||||||||||||||||||||||    
T  43907728 atcagagattagggttttccatgatttgcaaacac 43907694  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 19568068 - 19568129
Alignment:
Q  139 attagggttttccatgatttgcaaacacgtttcaatttcagtagggatctcactggaagcct 200  Q
    ||||||||||||||||||||||||||  | || ||||  || ||||||||||| ||||||||    
T  19568068 attagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcct 19568129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 42414210 - 42414174
Alignment:
Q  130 ggatcagagattagggttttccatgatttgcaaacac 166  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  42414210 ggatcggagattagggttttccatgatttgcatacac 42414174  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 43986909 - 43986993
Alignment:
Q  136 gagattagggttttccatgatttgcaaacacgtttcaatttcagtagggatctcactggaagccttaagaggatctgaaagatga 220  Q
    ||||||||||||||||||||||||||||  | ||| ||||  || |||||| |||| ||||| || || ||||||| || |||||    
T  43986909 gagattagggttttccatgatttgcaaatgcatttgaattgaagcagggatttcaccggaagtctcaaaaggatctcaatgatga 43986993  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 42693712 - 42693644
Alignment:
Q  129 aggatcagagattagggttttccatgatttgcaaacacgtttcaatttcagtagggatctcactggaag 197  Q
    ||||||||||||||| ||||||||||||||||| |||| ||| ||||  || || |||| |||||||||    
T  42693712 aggatcagagattagagttttccatgatttgcagacacatttgaattgaaggagagatcgcactggaag 42693644  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 12735669 - 12735709
Alignment:
Q  135 agagattagggttttccatgatttgcaaacacgtttcaatt 175  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  12735669 agagattagggttttccatgatttgcaaacacatttgaatt 12735709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 32579708 - 32579751
Alignment:
Q  132 atcagagattagggttttccatgatttgcaaacacgtttcaatt 175  Q
    |||||| |||||||||||||||||||||||||||| ||| ||||    
T  32579708 atcagaaattagggttttccatgatttgcaaacacatttgaatt 32579751  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 19721280 - 19721238
Alignment:
Q  130 ggatcagagattagggttttccatgatttgcaaacacgtttca 172  Q
    ||||||||||||||||||||| |||||||||| |||| |||||    
T  19721280 ggatcagagattagggttttcaatgatttgcagacacatttca 19721238  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 19888564 - 19888600
Alignment:
Q  139 attagggttttccatgatttgcaaacacgtttcaatt 175  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  19888564 attagggttttccatgatttgcaaacacatttgaatt 19888600  T

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Target: scaffold0464 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 7261 - 7221
Alignment:
Q  135 agagattagggttttccatgatttgcaaacacgtttcaatt 175  Q
    ||||||||||||||||||||||||||| |||| ||| ||||    
T  7261 agagattagggttttccatgatttgcagacacatttgaatt 7221  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 6936032 - 6936068
Alignment:
Q  130 ggatcagagattagggttttccatgatttgcaaacac 166  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  6936032 ggatcggagattagggttttccatgacttgcaaacac 6936068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 14748614 - 14748578
Alignment:
Q  139 attagggttttccatgatttgcaaacacgtttcaatt 175  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  14748614 attagggttttccatgatttgcaaacacatttgaatt 14748578  T

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