View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16876_low_6 (Length: 307)

Name: NF16876_low_6
Description: NF16876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16876_low_6
NF16876_low_6
[»] scaffold0094 (1 HSPs)
scaffold0094 (1-297)||(4498-4793)
[»] chr4 (5 HSPs)
chr4 (1-297)||(18556711-18557007)
chr4 (2-127)||(11098195-11098320)
chr4 (101-193)||(18231375-18231467)
chr4 (101-195)||(11556050-11556144)
chr4 (107-171)||(15872764-15872828)
[»] chr6 (5 HSPs)
chr6 (1-297)||(19547136-19547432)
chr6 (2-122)||(14970271-14970391)
chr6 (1-122)||(14980062-14980182)
chr6 (68-171)||(10906590-10906693)
chr6 (109-171)||(8403701-8403763)
[»] chr3 (9 HSPs)
chr3 (1-297)||(27870308-27870604)
chr3 (1-127)||(16642488-16642613)
chr3 (1-127)||(5943742-5943869)
chr3 (1-83)||(14062580-14062661)
chr3 (1-122)||(4712599-4712719)
chr3 (1-47)||(14054851-14054897)
chr3 (50-127)||(14481474-14481551)
chr3 (16-169)||(21975348-21975502)
chr3 (16-169)||(21997779-21997933)
[»] scaffold0290 (1 HSPs)
scaffold0290 (1-297)||(13902-14197)
[»] chr2 (3 HSPs)
chr2 (4-297)||(18987225-18987518)
chr2 (14-127)||(24786348-24786461)
chr2 (101-193)||(44586358-44586450)
[»] scaffold1269 (1 HSPs)
scaffold1269 (1-127)||(169-294)
[»] chr1 (3 HSPs)
chr1 (6-194)||(51626799-51626986)
chr1 (1-127)||(13882056-13882181)
chr1 (16-119)||(1566880-1566984)
[»] chr7 (4 HSPs)
chr7 (12-127)||(20026174-20026289)
chr7 (1-127)||(16060703-16060828)
chr7 (1-127)||(48376978-48377103)
chr7 (16-171)||(37945635-37945791)
[»] scaffold0319 (1 HSPs)
scaffold0319 (1-127)||(13369-13494)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-127)||(130973-131098)
[»] chr8 (1 HSPs)
chr8 (1-127)||(23658725-23658850)
[»] scaffold0218 (1 HSPs)
scaffold0218 (1-127)||(14568-14693)
[»] scaffold0091 (1 HSPs)
scaffold0091 (6-127)||(29248-29368)
[»] scaffold0057 (1 HSPs)
scaffold0057 (70-127)||(41017-41074)
[»] chr5 (1 HSPs)
chr5 (50-127)||(24831874-24831951)


Alignment Details
Target: scaffold0094 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 4498 - 4793
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatcataataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||    
T  4498 taagtaaacaacttaagactaagaatgaggaatatggtatgatatcataataaagtatatatagatcctagaatagatgagagaataggatatgtctgtg 4597  T
Q  101 aaatggataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatgatgggataatatggtgatataaatgtcttg 200  Q
    | |||||||||||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4598 agatggataataaaataaaatagagggttaatgacatagaaatgaatcgcgtgtaatggttggattaatgatgggataatatggtgatataaatgtcttg 4697  T
Q  201 ataggaacaaaattgtgaggagtcttagaactataatgaagagtgatgatgagtaatgttatgtaaaactataaatacgtacgatgaaagttgatga 297  Q
    ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||||    
T  4698 ataggaacaaaatggtgaggagtcttaggactataatgaagag-gatgatgagtaatgttatgtaaacctataaatacattcgatgaaagttgatga 4793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 18556711 - 18557007
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatcataataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtg 100  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||    
T  18556711 taagtaaacaaattaagactaagaatgagaaatatggtatgatatcataataaagtatatatagatcctagaatagatgagagaatagggtatgtctgtg 18556810  T
Q  101 aaatggataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatgatgggataatatggtgatataaatgtcttg 200  Q
    | |||||||||||||||||||||| ||||||||| || ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18556811 atatggataataaaataaaatagatggttaatgacatggaaatgagtcgcgtgtaatggttagattaatgatgggataatatggtgatataaatgtcttg 18556910  T
Q  201 ataggaacaaaattgtgaggagtcttagaactataatgaagagtgatgatgagtaatgttatgtaaaactataaatacgtacgatgaaagttgatga 297  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  18556911 ataggaacaaaatggtgaggagtcttaggactataatgaagagtgatgatgagtaatgttatgtaaacctataaatacgtgcgatgaaagttgatga 18557007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 11098195 - 11098320
Alignment:
Q  2 aagtaaacaacttaagaccaagaatgaggaatatggtatgatatcataataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtga 101  Q
    ||||||| | |||||||| |||||||||||||| |||||||||||| ||||||||| ||| ||  ||||||||| || ||||| ||  ||| ||  ||||    
T  11098195 aagtaaatatcttaagactaagaatgaggaataaggtatgatatcaaaataaagtatatagagggcctagaatatattagagaatatagtacgtatgtga 11098294  T
Q  102 aatggataataaaataaaatagaggg 127  Q
     ||| |||||||| ||||||| ||||    
T  11098295 gatgaataataaagtaaaataaaggg 11098320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 18231375 - 18231467
Alignment:
Q  101 aaatggataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatgatgggataatatggtgatataaa 193  Q
    ||||| ||||| ||||||||||||||| |  ||   |||||||||||| ||||||| |||||||||||| | | |||||  ||||||||||||    
T  18231375 aaatgaataatgaaataaaatagagggatcttggtgtagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaa 18231467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 11556144 - 11556050
Alignment:
Q  101 aaatggataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatgatgggataatatggtgatataaatg 195  Q
    ||||| ||||| || |||||||||||| |  |||  |||||||||||| ||||||| ||||||||| || | | |||||  ||||||||||||||    
T  11556144 aaatgaataatgaattaaaatagagggatgttgacgtagaaatgagtcatgcgtaagggttggattgataaagagataaggtggtgatataaatg 11556050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 15872764 - 15872828
Alignment:
Q  107 ataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatga 171  Q
    ||||||||||||||||||| | |  ||| |||||||||||||  ||||||  |||||||||||||    
T  15872764 ataataaaataaaatagagagatgttgatatagaaatgagtcacgcgtaagagttggattaatga 15872828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 19547136 - 19547432
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatcataataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtg 100  Q
    ||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||    
T  19547136 taagtaaacaacttaagactaagaatgagaaatatggtataatatcataataaagtatatatagatcctagaatagatgagagaatagggtatgtctgtg 19547235  T
Q  101 aaatggataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatgatgggataatatggtgatataaatgtcttg 200  Q
    | |||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19547236 agatggataataaaataaaatagatggttaatgacatggaaatgagtcgcgcgtaatggttggattaatgatggaataatatggtgatataaatgtcttg 19547335  T
Q  201 ataggaacaaaattgtgaggagtcttagaactataatgaagagtgatgatgagtaatgttatgtaaaactataaatacgtacgatgaaagttgatga 297  Q
    ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||  | ||||||||||||||    
T  19547336 ataggaacaaaatggtgaggagtcttaggactataatgaagtgtgatgatgagtaatgttatgtaaacctataaatacgggcaatgaaagttgatga 19547432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 14970391 - 14970271
Alignment:
Q  2 aagtaaacaacttaagaccaagaatgaggaatatggtatgatatcataataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtga 101  Q
    ||||||| | |||||||| |||||| ||||||| |||||| ||||| ||||||||| ||| ||  |||||||||||| ||||| ||| |||  ||  |||    
T  14970391 aagtaaatatcttaagactaagaattaggaatagggtatggtatcagaataaagtatatagagggcctagaatagataagagaatagagtacctctctga 14970292  T
Q  102 aatggataataaaataaaata 122  Q
     | | ||||||||||||||||    
T  14970291 gaagaataataaaataaaata 14970271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 14980062 - 14980182
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||| |  ||||||||   ||||||  ||| ||||||||||||| ||  ||||||  ||    
T  14980062 taagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagt--ttatagagtctataatagatgagagaatattgtatgttcgt 14980159  T
Q  100 gaaatggataataaaataaaata 122  Q
     ||| | ||||||||||||||||    
T  14980160 aaaaggaataataaaataaaata 14980182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 10906590 - 10906693
Alignment:
Q  68 ctagaatagatgagagagtagggtatgtcagtgaaatggataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggatta 167  Q
    |||||||||| || ||| ||| ||||||| || ||| | ||||||||||||||||||||| || |||  |||||||||| |    |||| ||||||||||    
T  10906590 ctagaatagacgaaagaatagagtatgtccgtaaaacgaataataaaataaaatagagggatattgacgtagaaatgagccacatgtaagggttggatta 10906689  T
Q  168 atga 171  Q
    ||||    
T  10906690 atga 10906693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 8403701 - 8403763
Alignment:
Q  109 aataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatga 171  Q
    ||||||||||||||||||| |  |||  ||||||||||||  |||||| ||||||||||||||    
T  8403701 aataaaataaaatagagggatgttgatgtagaaatgagtcacgcgtaagggttggattaatga 8403763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 27870308 - 27870604
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatcataataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||||| |||    
T  27870308 taagtaaacaacttaagactaagaatgaggaatatggtatgatatcataataaagtatatatagatcctagaatagatgagaaaatagagtatgtctgtg 27870407  T
Q  101 aaatggataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatgatgggataatatggtgatataaatgtcttg 200  Q
    | || |||||||||||||||||||||| || |||  | |||||||||||  ||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  27870408 agatagataataaaataaaatagagggatagtgacgtggaaatgagtcgcacgtaagggttggattaatgaagggataatgtggtgatataaatgtcttg 27870507  T
Q  201 ataggaacaaaattgtgaggagtcttagaactataatgaagagtgatgatgagtaatgttatgtaaaactataaatacgtacgatgaaagttgatga 297  Q
    | ||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||||||||  |||||||| || |||||||||| |||||    
T  27870508 agaggaacaaaatggtgaggagtcttaggattgtaatgaagagtgatgatgagtaatgttatgtaaacttataaatatgttcgatgaaagtcgatga 27870604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 16642613 - 16642488
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| |  ||||||||   ||||||  ||||||||||||||||| ||  ||||||  ||    
T  16642613 taagaaaacaacttgagaccaagaatgaggaatatggtatgatattaggaataaagt--ttatagagtctagaatagatgagagaataatgtatgttcgt 16642516  T
Q  100 gaaatggataataaaataaaatagaggg 127  Q
     ||||| ||| |||||||||||| ||||    
T  16642515 aaaatgaatactaaaataaaatataggg 16642488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 5943742 - 5943869
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatcataa-taaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||||| ||| |||| |||||||||||||| || ||||||||  || ||||||  ||||| |||||||||||||||||| | ||| |||||||  |    
T  5943742 taagaaaacatcttgagactaagaatgaggaatagggaatgatatcggaaataaagtttatatatatcctagaatagatgagaaaatagagtatgtccat 5943841  T
Q  100 gaaatggataataaaataaaatagaggg 127  Q
     | ||| |||||||||||||||||||||    
T  5943842 aagatgaataataaaataaaatagaggg 5943869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 14062580 - 14062661
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagag 83  Q
    |||| ||| ||||| |||||||||||||||||||||| |||||||||  ||||||||   |||||| |||||||||||||||||    
T  14062580 taagaaaaaaacttgagaccaagaatgaggaatatggcatgatatcaggaataaagt--ttatagagcctagaatagatgagag 14062661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 4712599 - 4712719
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||| |  ||||||||   ||||||  ||| ||||||||||||| ||  ||||||  ||    
T  4712599 taagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagt--ttatagagtctataatagatgagagaatattgtatgttcgt 4712696  T
Q  100 gaaatggataataaaataaaata 122  Q
     ||| | ||||||||||||||||    
T  4712697 aaaaggaataataaaataaaata 4712719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14054851 - 14054897
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca 47  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  14054851 taagaaaacaacttgagaccaagaatgaagaatatggtatgatatca 14054897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 14481474 - 14481551
Alignment:
Q  50 ataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtgaaatggataataaaataaaatagaggg 127  Q
    |||||||| ||||||   || |||||||||||||| ||| ||||||| |||| ||| |||||||||||||||| ||||    
T  14481474 ataaagtatatatagggtcttgaatagatgagagaatagagtatgtctgtgagatgaataataaaataaaataaaggg 14481551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 21975502 - 21975348
Alignment:
Q  16 agaccaagaatgaggaatatggtatgatatcataa-taaagtagatatagatcctagaatagatgagagagtagggtatgtcagtgaaatggataataaa 114  Q
    |||| ||||||||| |||| | |||| |||||||| ||||||| | | ||| || | |||||||||  |  ||| |||||||  | ||||| ||||||||    
T  21975502 agactaagaatgagtaataggttatgctatcataagtaaagtataaagagagccgaaaatagatgatgggatagagtatgtctataaaatgaataataaa 21975403  T
Q  115 ataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaat 169  Q
    ||||||||||||| |  |||  |||||||||||| || | || ||||||||||||    
T  21975402 ataaaatagagggatgttgatgtagaaatgagtcatgtgcaaaggttggattaat 21975348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 21997933 - 21997779
Alignment:
Q  16 agaccaagaatgaggaatatggtatgatatcataa-taaagtagatatagatcctagaatagatgagagagtagggtatgtcagtgaaatggataataaa 114  Q
    |||| ||||||||| |||| | |||| |||||||| ||||||| | | ||| || | |||||||||  |  ||| |||||||  | ||||| ||||||||    
T  21997933 agactaagaatgagtaataggttatgctatcataagtaaagtataaagagagccgaaaatagatgatgggatagagtatgtctataaaatgaataataaa 21997834  T
Q  115 ataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaat 169  Q
    ||||||||||||| |  |||  |||||||||||| || | || ||||||||||||    
T  21997833 ataaaatagagggatgttgatgtagaaatgagtcatgtgcaaaggttggattaat 21997779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 13902 - 14197
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatcataataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||| ||||||| |||    
T  13902 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatcataataaagtatatatagatactagaatagatgagaaaatagagtatgtctgtg 14001  T
Q  101 aaatggataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatgatgggataatatggtgatataaatgtcttg 200  Q
    | || |||||||||||||||||||||  || | |  | ||||||||||| ||||||  ||||||||||||| || ||||| |||||||||||||||||||    
T  14002 agatagataataaaataaaatagaggaatagtaacgtggaaatgagtcgcgcgtaagagttggattaatgaaggcataatgtggtgatataaatgtcttg 14101  T
Q  201 ataggaacaaaattgtgaggagtcttagaactataatgaagagtgatgatgagtaatgttatgtaaaactataaatacgtacgatgaaagttgatga 297  Q
    | ||||| ||||| ||||||| |||||| | | |||||||||||||||||||| |||||||||||||  ||||| ||||| || |||||||||||||    
T  14102 agaggaa-aaaatggtgaggattcttaggattgtaatgaagagtgatgatgagcaatgttatgtaaacttataagtacgtgcggtgaaagttgatga 14197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 18987225 - 18987518
Alignment:
Q  4 gtaaacaacttaagaccaagaatgaggaatatggtatgatatcataataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtgaaa 103  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| | ||  |||||||  ||| |    
T  18987225 gtaaacaacttaagaccaagattgaggaatatggtatgatgtcataataaagtatatatagatcctaggatagatgagaaaatatagtatgtctttgaga 18987324  T
Q  104 tggataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatgatgggataatatggtgatataaatgtcttgata 203  Q
    | |||||||||||||||||||||  || | |  | |||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||| |    
T  18987325 tagataataaaataaaatagaggaatagtaacgtggaaatgagtcgtgcgtaagggttcgattaatgaagggataatgtggtgatataaatgtcttgaga 18987424  T
Q  204 ggaacaaaattgtgaggagtcttagaactataatgaagagtgatgatgagtaatgttatgtaaaactataaatacgtacgatgaaagttgatga 297  Q
    |||| ||||| | ||||| |||||| | | | ||||||||||||||||||||||||||||||||  ||||| || || || |||||||||||||    
T  18987425 ggaaaaaaatggcgaggattcttaggattgtcatgaagagtgatgatgagtaatgttatgtaaacttataagtatgtgcggtgaaagttgatga 18987518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 24786461 - 24786348
Alignment:
Q  14 taagaccaagaatgaggaatatggtatgatatcataataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtgaaatggataataa 113  Q
    |||||| ||||||||||||||  ||||||||||| ||||||||| ||| |   |||||||||||||||||| ||| | | ||| |||| ||| |||||||    
T  24786461 taagactaagaatgaggaatagagtatgatatcagaataaagtatatagattgcctagaatagatgagagaatagagcacgtctgtgagatgaataataa 24786362  T
Q  114 aataaaatagaggg 127  Q
    ||||||||| ||||    
T  24786361 aataaaataaaggg 24786348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 44586358 - 44586450
Alignment:
Q  101 aaatggataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatgatgggataatatggtgatataaa 193  Q
    ||||| ||||| ||||||||||||||| |  ||| ||||||||||||| ||||||| |||||||||||| | | |||||  ||||||||||||    
T  44586358 aaatgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaa 44586450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 294 - 169
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||  ||||||||   |||||| |||||||||||||||||| ||  ||||||  ||    
T  294 taagaaaacaacttgagaccaagaatgaggaatatgatatgatatcaggaataaagt--ttatagagcctagaatagatgagagaataatgtatgttcgt 197  T
Q  100 gaaatggataataaaataaaatagaggg 127  Q
     ||||| ||| |||||||||||| ||||    
T  196 aaaatgaatactaaaataaaatataggg 169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 51626799 - 51626986
Alignment:
Q  6 aaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtgaaat 104  Q
    ||||||||| |||||| |||||||||||||||||||||||||  ||||||||   |||||| |||||||||||||||||| ||  ||||||   | ||||    
T  51626799 aaacaacttgagaccaggaatgaggaatatggtatgatatcaggaataaagt--ttatagagcctagaatagatgagagaataatgtatgttcctaaaat 51626896  T
Q  105 ggataataaaataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatgatgggataatatggtgatataaat 194  Q
    | ||| |||||||||||| ||||    |||  ||||| ||| |   |||||| |||||||||||||| | ||||  ||||||||||||||    
T  51626897 gaatactaaaataaaatatagggaagttgacgtagaattgaattacgcgtaagggttggattaatgaagagatacaatggtgatataaat 51626986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 13882056 - 13882181
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||| |  ||||||||   ||||||| ||||||||||||||||| ||  ||||||  ||    
T  13882056 taagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagt--ttatagattctagaatagatgagagaataatgtatgttcgt 13882153  T
Q  100 gaaatggataataaaataaaatagaggg 127  Q
     ||||| ||| |||||||||||| ||||    
T  13882154 aaaatgaatactaaaataaaatataggg 13882181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 1566880 - 1566984
Alignment:
Q  16 agaccaagaatgaggaatatggtatgatatcata-ataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtgaaatggataataaa 114  Q
    |||| |||||||||||||| | |||| |||||   |||||||  ||| ||| ||||||||||| |||||| ||  ||||||| || ||||| ||||||||    
T  1566880 agactaagaatgaggaataggatatggtatcagggataaagtttatagagagcctagaatagaagagagaataaagtatgtccgtaaaatgaataataaa 1566979  T
Q  115 ataaa 119  Q
    |||||    
T  1566980 ataaa 1566984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 20026289 - 20026174
Alignment:
Q  12 cttaagaccaagaatgaggaatatggtatgatatcataataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtgaaatggataat 111  Q
    |||||| | |||||||| ||||| |||||||||||| ||||||||| ||||||  |||||||||||||||||| ||  ||| ||| || | ||| |||||    
T  20026289 cttaaggctaagaatgatgaatagggtatgatatcagaataaagtatatatagggcctagaatagatgagagaatatagtacgtctgtaagatgaataat 20026190  T
Q  112 aaaataaaatagaggg 127  Q
    |||||| |||| ||||    
T  20026189 aaaatagaataaaggg 20026174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 16060828 - 16060703
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||| |  ||||||||   ||||||  ||||||||||||||||| ||  ||||||  ||    
T  16060828 taagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagt--ttatagagtctagaatagatgagagaataatgtatgttcgt 16060731  T
Q  100 gaaatggataataaaataaaatagaggg 127  Q
     ||||| ||| |||||||||||| ||||    
T  16060730 aaaatgaatactaaaataaaatataggg 16060703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 48377103 - 48376978
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||| |  ||||||||    ||||| |||||||||||||||||| ||  ||||||  ||    
T  48377103 taagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagt--tcatagagcctagaatagatgagagaataatgtatgttcgt 48377006  T
Q  100 gaaatggataataaaataaaatagaggg 127  Q
     ||||| ||| |||||||||||| ||||    
T  48377005 aaaatgaatactaaaataaaatataggg 48376978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 37945635 - 37945791
Alignment:
Q  16 agaccaagaatgaggaatatggtatgatatcataa-taaagtagatatagatcctagaatagatgagagagtagggtatgtcagtgaaatggataataaa 114  Q
    |||| ||||||||| |||| ||||||||||   || ||||||||||| ||| ||||||||||||| ||||  || ||||||| || | ||| ||||||||    
T  37945635 agactaagaatgagaaatagggtatgatatttgaaataaagtagatagagagcctagaatagatgcgagaacagagtatgtccgtaagatgaataataaa 37945734  T
Q  115 ataaaatagagggttaatgaaatagaaatgagtcgtgcgtaatggttggattaatga 171  Q
     |||||||||||  |  |||  ||||||||||||  || ||| |||| |||||||||    
T  37945735 ttaaaatagaggaatgttgacgtagaaatgagtcacgcataagggtttgattaatga 37945791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 13369 - 13494
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||| |  ||||||||   ||||||  ||||||||||||||||| ||  ||||||  ||    
T  13369 taagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagt--ttatagaaactagaatagatgagagaataatgtatgttcgt 13466  T
Q  100 gaaatggataataaaataaaatagaggg 127  Q
     ||||| ||| |||||||||||| ||||    
T  13467 aaaatgaatactaaaataaaatataggg 13494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 131098 - 130973
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||||||||| ||||| ||||||||||||| |||||||||| |  ||||||||   ||||||| ||||||||||||||||| ||  ||||||  ||    
T  131098 taagaaaacaacttgagaccgagaatgaggaatagggtatgatattaggaataaagt--ttatagattctagaatagatgagagaataatgtatgttcgt 131001  T
Q  100 gaaatggataataaaataaaatagaggg 127  Q
     ||||| ||| |||||||||||| ||||    
T  131000 aaaatgaatactaaaataaaatataggg 130973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 23658850 - 23658725
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||| ||||| ||| |||||||||||||||||||||||||| |  ||||||||   ||||||| ||||||||||||||||| ||  ||||||  ||    
T  23658850 taagaaaagaacttgagatcaagaatgaggaatatggtatgatattaggaataaagt--ttatagattctagaatagatgagagaataatgtatgttcgt 23658753  T
Q  100 gaaatggataataaaataaaatagaggg 127  Q
     ||||| ||| |||||||||||| ||||    
T  23658752 aaaatgaatagtaaaataaaatataggg 23658725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 14693 - 14568
Alignment:
Q  1 taagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagt 99  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||| |  ||||||||   |||||| ||||||||||| |||||| ||  ||||||  ||    
T  14693 taagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagt--ttatagagcctagaatagacgagagaataatgtatgttcgt 14596  T
Q  100 gaaatggataataaaataaaatagaggg 127  Q
     ||||| |||  ||||||||||| ||||    
T  14595 aaaatgaatacgaaaataaaatataggg 14568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 29368 - 29248
Alignment:
Q  6 aaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtgaaat 104  Q
    ||||||||| ||||||||||||||||||| |||||||||| |  ||||||||   ||||||  |||||||| |||||||| ||  ||||||  || ||||    
T  29368 aaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagt--ttatagagtctagaataaatgagagaataatgtatgttcgtaaaat 29271  T
Q  105 ggataataaaataaaatagaggg 127  Q
    | ||| |||||||||||| ||||    
T  29270 gaatactaaaataaaatataggg 29248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 41074 - 41017
Alignment:
Q  70 agaatagatgagagagtagggtatgtcagtgaaatggataataaaataaaatagaggg 127  Q
    ||||||||||||||| ||| ||||||| || ||| | |||||||||||||||||||||    
T  41074 agaatagatgagagaatagagtatgtccgtaaaacgaataataaaataaaatagaggg 41017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 24831874 - 24831951
Alignment:
Q  50 ataaagtagatatagatcctagaatagatgagagagtagggtatgtcagtgaaatggataataaaataaaatagaggg 127  Q
    |||||||| ||||||  ||| ||||||| |||||| ||| ||||||| |||| ||| |||||||||||||||| ||||    
T  24831874 ataaagtatatatagggccttgaatagaagagagaatagagtatgtctgtgagatgaataataaaataaaataaaggg 24831951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University