View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16876_low_7 (Length: 264)
Name: NF16876_low_7
Description: NF16876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16876_low_7 |
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| [»] scaffold0564 (1 HSPs) |
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Alignment Details
Target: scaffold0564 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 10709 - 10485
Alignment:
| Q |
24 |
atcaagtttatgtagcagttagtttgatattaacgtaagttaaaactcatgtccttcaataaaagcttgtttgttacaaagttctggaatgcaatgttaa |
123 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
10709 |
atcaagtttatgtagcaattagtttgatattaacgtaagttgaaactcatgtccttcaataaaagcttgtt----acaaggttctggaatgcaatgttaa |
10614 |
T |
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| Q |
124 |
tagttaaacaacatagtgtgatgatgacatgtgcagagaagtcagtattgtatctcctaactcctattattctgtttgactattatgatactaagatatt |
223 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10613 |
tagttaaacagcatagtgtgatgatgacatgtgcagagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatatt |
10514 |
T |
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| Q |
224 |
gtgaattgttccggctagcctatgcttct |
252 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
10513 |
gtgaattgttccggctagcctatggttct |
10485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 39489919 - 39489697
Alignment:
| Q |
24 |
atcaagtttatgtagcagttagtttgatattaacgtaagttaaaactcatgtccttcaataaaagcttgtttgttacaaagttctggaatgcaatgttaa |
123 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
39489919 |
atcaagtttatgtagcaattagtttgatattaacgtaagttgaaactcatgtccttcaataaaagcttgtt----acaaagttctggaatgcaatgt--a |
39489826 |
T |
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| Q |
124 |
tagttaaacaacatagtgtgatgatgacatgtgcagagaagtcagtattgtatctcctaactcctattattctgtttgactattatgatactaagatatt |
223 |
Q |
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| T |
39489825 |
tagttaaacagcatagtgtgatgatgacatgtgcaaagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatatt |
39489726 |
T |
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| Q |
224 |
gtgaattgttccggctagcctatgcttct |
252 |
Q |
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| T |
39489725 |
gtgaattgttccggctagcctatggttct |
39489697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 24 - 252
Target Start/End: Original strand, 12749118 - 12749340
Alignment:
| Q |
24 |
atcaagtttatgtagcagttagtttgatattaacgtaagttaaaactcatgtccttcaataaaagcttgtttgttacaaagttctggaatgcaatgttaa |
123 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
12749118 |
atcaagtttatgtagcaattagtttgatattaacgtaagttgaaactcatgtccttcaataaaagcttgtt----acaaagttctggaatgcaatgt--a |
12749211 |
T |
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| Q |
124 |
tagttaaacaacatagtgtgatgatgacatgtgcagagaagtcagtattgtatctcctaactcctattattctgtttgactattatgatactaagatatt |
223 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12749212 |
tagttaaacagcatagtgtgatgatgacatgtgcaaagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatatt |
12749311 |
T |
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| Q |
224 |
gtgaattgttccggctagcctatgcttct |
252 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
12749312 |
gtgaattgttccggctagcctatggttct |
12749340 |
T |
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