View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16876_low_8 (Length: 240)

Name: NF16876_low_8
Description: NF16876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16876_low_8
NF16876_low_8
[»] chr4 (5 HSPs)
chr4 (5-240)||(41691765-41692003)
chr4 (80-154)||(4059118-4059192)
chr4 (98-135)||(3067633-3067670)
chr4 (101-154)||(52803252-52803305)
chr4 (101-161)||(18371187-18371247)
[»] chr3 (3 HSPs)
chr3 (87-161)||(11076940-11077014)
chr3 (98-161)||(16041166-16041229)
chr3 (104-145)||(37820804-37820845)
[»] chr1 (2 HSPs)
chr1 (87-161)||(25808485-25808559)
chr1 (98-161)||(46298584-46298647)
[»] chr7 (4 HSPs)
chr7 (100-161)||(33902216-33902277)
chr7 (104-172)||(46603776-46603842)
chr7 (104-161)||(9603519-9603576)
chr7 (104-161)||(9831090-9831147)
[»] chr6 (1 HSPs)
chr6 (80-145)||(25070403-25070468)
[»] scaffold0007 (1 HSPs)
scaffold0007 (104-161)||(176221-176278)
[»] chr8 (1 HSPs)
chr8 (101-161)||(25267031-25267091)
[»] chr5 (2 HSPs)
chr5 (101-161)||(7802030-7802089)
chr5 (98-138)||(35075890-35075930)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 41692003 - 41691765
Alignment:
Q  5 gaacaaacacatgcttaatcaatgttttttggaaaatgctcttaaacataagtcaacaaaattaaaatagaaacatt--attataaattgagtaatcaat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||||||||    
T  41692003 gaacaaacacatgcttaatcaatgttttttggaaaatgctcttaaacacaagttaacaaaattaaaatagaaacattttattataaattgagtaatcaat 41691904  T
Q  103 atttt-agaaatttaaaatcttatcatttgaagacaacatttatattctaattccattttagacttcttaatttaaggcataagttaatatgaccatgtt 201  Q
    ||||| | ||||||||||||||||||||| | || |||||||||||| ||||||||||||| |||| |||| |||||||| ||||||| |||||| || |    
T  41691903 atttttaaaaatttaaaatcttatcatttcatgataacatttatattttaattccattttaaacttgttaacttaaggcacaagttaacatgaccgtgat 41691804  T
Q  202 tttatttatttaaaggagattaaagtgaagttagcatga 240  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  41691803 tttatttatttaaaggggattaaagtaaagttagcatga 41691765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 4059192 - 4059118
Alignment:
Q  80 ttattataaattgagtaatcaatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaatt 154  Q
    |||||| |||||| ||| |  |||||||||||||||||||| ||||| ||| ||||||| |||||| || |||||    
T  4059192 ttattagaaattgtgtattttatattttagaaatttaaaattttatcttttcaagacaaaatttatgttttaatt 4059118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 3067670 - 3067633
Alignment:
Q  98 tcaatattttagaaatttaaaatcttatcatttgaaga 135  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  3067670 tcaatattttagaaatttaaaatcttatcttttcaaga 3067633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 52803305 - 52803252
Alignment:
Q  101 atattttagaaatttaaaatcttatcatttgaagacaacatttatattctaatt 154  Q
    |||||||||||||||||||||||||| ||| |||| || |||||| || |||||    
T  52803305 atattttagaaatttaaaatcttatccttttaagataaaatttatgttttaatt 52803252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 18371187 - 18371247
Alignment:
Q  101 atattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 161  Q
    ||||||||||| |||||||||||||  ||| |||| || ||||||||| ||||||| ||||    
T  18371187 atattttagaactttaaaatcttatatttttaagataaaatttatattttaattccttttt 18371247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 11077014 - 11076940
Alignment:
Q  87 aaattgagtaatcaatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 161  Q
    |||||| | ||||||||||||||||||||||||||||||  ||| ||||||| |||||| || ||||||||||||    
T  11077014 aaattgtgcaatcaatattttagaaatttaaaatcttatattttcaagacaaaatttatgttttaattccatttt 11076940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 16041166 - 16041229
Alignment:
Q  98 tcaatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 161  Q
    |||||||| |||||||||||||||||||| ||| ||||||  ||||||  | ||||||||||||    
T  16041166 tcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccatttt 16041229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 37820845 - 37820804
Alignment:
Q  104 ttttagaaatttaaaatcttatcatttgaagacaacatttat 145  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||    
T  37820845 ttttagaaatttaaaatcttatctttttaagacaatatttat 37820804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 25808559 - 25808485
Alignment:
Q  87 aaattgagtaatcaatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 161  Q
    |||||| ||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||  | ||||||||||||    
T  25808559 aaattgtgtattcaatattttaaaaatttaaaattttatcttttgaagacaacatttatgatttaattccatttt 25808485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 46298584 - 46298647
Alignment:
Q  98 tcaatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 161  Q
    |||||||| |||||||||||||||||||| ||| |||||||||||||| || |||||| |||||    
T  46298584 tcaatattatagaaatttaaaatcttatcttttcaagacaacatttatgttttaattctatttt 46298647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 33902277 - 33902216
Alignment:
Q  100 aatattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 161  Q
    ||||||||||||||||||||||||||| ||| ||||||  ||||||| | ||||||||||||    
T  33902277 aatattttagaaatttaaaatcttatcttttcaagacataatttataatttaattccatttt 33902216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 46603776 - 46603842
Alignment:
Q  104 ttttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccattttagacttcttaa 172  Q
    ||||||||||||||||||||||| ||| ||||||  ||||||||| ||||||||||||  |||||||||    
T  46603776 ttttagaaatttaaaatcttatcttttcaagaca--atttatattttaattccatttttaacttcttaa 46603842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 9603519 - 9603576
Alignment:
Q  104 ttttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 161  Q
    ||||||||||||||||||||||| ||| || |||| |||||| || |||||| |||||    
T  9603519 ttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctatttt 9603576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 9831090 - 9831147
Alignment:
Q  104 ttttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 161  Q
    ||||||||||||||||||||||| ||| || |||| |||||| || |||||| |||||    
T  9831090 ttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctatttt 9831147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 25070468 - 25070403
Alignment:
Q  80 ttattataaattgagtaatcaatattttagaaatttaaaatcttatcatttgaagacaacatttat 145  Q
    |||||| |||||| ||| |  |||||||||||||||||||||||||| ||||||||||| ||||||    
T  25070468 ttattaaaaattgtgtatttcatattttagaaatttaaaatcttatcttttgaagacaaaatttat 25070403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 176278 - 176221
Alignment:
Q  104 ttttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 161  Q
    |||||||||||||||||| |||  ||| ||||||||||||||||| ||||| ||||||    
T  176278 ttttagaaatttaaaatcctatattttcaagacaacatttatattttaatttcatttt 176221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 25267091 - 25267031
Alignment:
Q  101 atattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 161  Q
    ||||| |||||||||||||||||||||||| ||||||  ||||||  | ||||||||||||    
T  25267091 atattatagaaatttaaaatcttatcatttcaagacataatttatgatttaattccatttt 25267031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 7802030 - 7802089
Alignment:
Q  101 atattttagaaatttaaaatcttatcatttgaagacaacatttatattctaattccatttt 161  Q
    |||||||||||||||||||| ||||| ||| ||||||| ||||  ||| ||||||||||||    
T  7802030 atattttagaaatttaaaattttatc-ttttaagacaaaatttgcattttaattccatttt 7802089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 35075890 - 35075930
Alignment:
Q  98 tcaatattttagaaatttaaaatcttatcatttgaagacaa 138  Q
    |||||||| |||||||||||||||||||| ||| |||||||    
T  35075890 tcaatattctagaaatttaaaatcttatcttttcaagacaa 35075930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University