View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16876_low_9 (Length: 222)
Name: NF16876_low_9
Description: NF16876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16876_low_9 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: scaffold0055 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 1196 - 1366
Alignment:
| Q |
14 |
ataattctggattctaatgtacgagatcttgtagcacttaccaatgaggtgctatcgattagtattatacnnnnnnnnntctattataaacactaatata |
113 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| ||||||||||| |
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| T |
1196 |
ataactctgggttctaatgtacgagatcttgtagcacttaccaatgaggcgctatcgattagtattatacaaaaaaaa-tccattatagacactaatata |
1294 |
T |
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| Q |
114 |
attagatacgctcttcatagacaaacttgagattttagatctcagataagatcggttgaggatcatggtata |
185 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1295 |
attagatacgctcttcatagacaaacttgggattttagatctcagataagatcggttgaggatcatggtata |
1366 |
T |
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Target: scaffold0052 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 83339 - 83169
Alignment:
| Q |
14 |
ataattctggattctaatgtacgagatcttgtagcacttaccaatgaggtgctatcgattagtattatacnnnnnnnnntctattataaacactaatata |
113 |
Q |
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| T |
83339 |
ataactctgggttctaatgtacgagatcttgtagcacttaccaatgaggcgctatcgattagtattatacaaaaaaaa-tccattatagacactaatata |
83241 |
T |
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| Q |
114 |
attagatacgctcttcatagacaaacttgagattttagatctcagataagatcggttgaggatcatggtata |
185 |
Q |
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| T |
83240 |
attagatacgctcttcatagacaaacttgggattttagatctcagataagatcggttgaggatcatggtata |
83169 |
T |
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Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 18353187 - 18353357
Alignment:
| Q |
14 |
ataattctggattctaatgtacgagatcttgtagcacttaccaatgaggtgctatcgattagtattatacnnnnnnnnntctattataaacactaatata |
113 |
Q |
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| T |
18353187 |
ataactctgggttctaatgtacgagatcttgtagcacttaccaatgaggcgctatcgattagtattatacaaaaaaaa-tccattatagacactaatata |
18353285 |
T |
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| Q |
114 |
attagatacgctcttcatagacaaacttgagattttagatctcagataagatcggttgaggatcatggtata |
185 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18353286 |
attagacacgctcttcatagacaaacttgggattttagatctcagataagatcggttgaggatcatggtata |
18353357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 40977574 - 40977501
Alignment:
| Q |
107 |
taatataattagatacgctcttcatagacaaacttgagattttagatctcagataagatcggttgaggatcatg |
180 |
Q |
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| T |
40977574 |
taatataattagatagactcttcataaacaaacttgagattttagatctcagataagatcggttgaggatcatg |
40977501 |
T |
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Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 13232419 - 13232268
Alignment:
| Q |
33 |
tacgagatcttgtagcacttaccaatgaggtgctatcgattagtattatacnnnnnnnnntctattataaacactaatataattagatacgctcttcata |
132 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| ||||||||||||||||| |||||||||||| |
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| T |
13232419 |
tacgagatcttgtagcacttaccaatgaggcgctatcgattagtattatacaaaaaaaa-tccattatagacactaatataattagacacgctcttcata |
13232321 |
T |
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| Q |
133 |
gacaaacttgagattttagatctcagataagatcggttgaggatcatggtata |
185 |
Q |
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| T |
13232320 |
gacaaacttgggattttagatctcagataagatcggttgaggatcatggtata |
13232268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 3589 - 3740
Alignment:
| Q |
29 |
aatgtacgagatcttgtagcacttaccaatgaggtgctatcgattagtattatacnnnnnnnnntctattataaacactaatataattagatacgctctt |
128 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||| || || |||||| ||||||||| |||||||| |||||| |
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| T |
3589 |
aatgcacgagatcttgtagcacttaccaatgaggccctatcgattagtattacacagaagaaa-tcaattatagacactaatacaattagatctgctctt |
3687 |
T |
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| Q |
129 |
catagacaaacttgagattttagatctcagataagatcggttgaggatcatgg |
181 |
Q |
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|||||||||||||| ||||| |||| ||| ||||||||||| |||||||||| |
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| T |
3688 |
catagacaaacttgggatttgcgatcccaggtaagatcggttcaggatcatgg |
3740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 7708365 - 7708247
Alignment:
| Q |
19 |
tctggattctaatgtacgagatcttgtagcacttaccaatgaggtgctatcgattagtattatacnnnnnnnnntctattataaacactaatataattag |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| || |||||| ||||| || ||||||| |
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| T |
7708365 |
tctgggttctaatgtacgagatcttgtagcacttaccaacgaggcgctagcgattagtattatac-aaaaaaaatccattatagacactgatgtaattag |
7708267 |
T |
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| Q |
119 |
atacgctcttcatagacaaa |
138 |
Q |
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|| ||||||||||||||||| |
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| T |
7708266 |
atccgctcttcatagacaaa |
7708247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 39337790 - 39337749
Alignment:
| Q |
144 |
gattttagatctcagataagatcggttgaggatcatggtata |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39337790 |
gattttagatctcagataagatcggttgaggatcatggtata |
39337749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 2916852 - 2916897
Alignment:
| Q |
14 |
ataattctggattctaatgtacgagatcttgtagcacttaccaatg |
59 |
Q |
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| T |
2916852 |
ataactctgggttctaatgtacgagatcttgtagcacttaccaatg |
2916897 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 14989611 - 14989669
Alignment:
| Q |
25 |
ttctaatgtacgagatcttgtagcacttaccaatgaggtgctatcgattagtattatac |
83 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |
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| T |
14989611 |
ttctaatgtacgagatcttatagcacttaccaatgaggctctatcaattagtattatac |
14989669 |
T |
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