View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16877_high_2 (Length: 323)
Name: NF16877_high_2
Description: NF16877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16877_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 35 - 306
Target Start/End: Complemental strand, 7666889 - 7666615
Alignment:
| Q |
35 |
tatctttgatctatttgatcgtttgcttcattcttacgatccgtacagactcgtggtttcatgttaactttttattatgacttctcactttgtaagtctt |
134 |
Q |
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| T |
7666889 |
tatctttgatctatttgatcgtttgcttcattcttacgatccgtacggactcgtggtttcatgttaacttgttattatgacttctcactttgtaagtctt |
7666790 |
T |
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| Q |
135 |
taatttattctattctattcctactcttccacatgaatggtgttatcttccaaaaatttatgtaaattttattaaatggtgctattttcgagagtcaaga |
234 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7666789 |
taatttattctattctattcctactcttcaacataaatggtgttatcttccaaaaatttatgtagattttattaaatggtgctattttcgagagtcaaga |
7666690 |
T |
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| Q |
235 |
aaaa---tagttgaataaacaagttgtatatatgaaaatacttactccccgtgcttttaattacatgtcggagtt |
306 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7666689 |
aaaatactagttgaataaacaagttgtacatatgaaaatacttactccccgtgcttttaattacatgtcggagtt |
7666615 |
T |
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