View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16877_low_1 (Length: 459)
Name: NF16877_low_1
Description: NF16877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16877_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 40 - 444
Target Start/End: Original strand, 19992766 - 19993170
Alignment:
| Q |
40 |
atcatttccaccctgagaagcaaaagtctcttttgtatattgtcctccatcctcttctttcttgtttgctaaaaactcaagagctgtaactacatcactg |
139 |
Q |
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| T |
19992766 |
atcatttccaccctgagaagcaaaagtctcttttgtatattgtcctccatcctcttctttcttgtttgctaaaaactcaagagctgtaactacatcactg |
19992865 |
T |
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| Q |
140 |
attaaaggcctagtatcagcttcctcttgcagacacatagctgcaattgctagagcttgatatagaccctttatagggtacttatcttctagcaatggat |
239 |
Q |
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| T |
19992866 |
attaaaggcctagtatcagcttcctcttgcagacacatagctgcaattgctagagcttgatatagaccctttatagggtacttatcttctagcaatggat |
19992965 |
T |
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| Q |
240 |
ctgccatttgtgtgaatttctttctgtctcttagaagaggttgtgcctgaaaaagaagaaacatccatcataatgaataatgtgaatttctttccgtctc |
339 |
Q |
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| T |
19992966 |
ctgccatttgtgtgaatttctttctgtctcttagaagaggctgtgcctgaaaaagaagaaacatccatcataatgaataatgtgaatttctttctgtctc |
19993065 |
T |
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| Q |
340 |
ttatgatttttggtacataagaaaggtttgaagacttacccaaaggactaaattttgctcttctgatggcctagaattgtcaatgactcttctgcctgtg |
439 |
Q |
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| T |
19993066 |
ttatgatttttggtacataagaaaggtttgaagacttacccaaaggactaaattttgctcttctgatggcctagaattgtcaatgactcttctgcctgtg |
19993165 |
T |
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| Q |
440 |
ataat |
444 |
Q |
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| T |
19993166 |
ataat |
19993170 |
T |
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