View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16878_high_2 (Length: 394)
Name: NF16878_high_2
Description: NF16878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16878_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 32 - 386
Target Start/End: Original strand, 3036766 - 3037120
Alignment:
| Q |
32 |
aggtggtgaattgttaacaaggatggtgtcgacgacaaaaacaggaggaggaggagtggggtccacagttggatggttgggttgagtgtgagagtggtga |
131 |
Q |
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| T |
3036766 |
aggtggtgaattgttaacaaggatggtgtcgacgacaaaaacaggaggaggaggagtggggtccacaattggatggttgggttgagtgtgagagtggtga |
3036865 |
T |
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| Q |
132 |
aatctggaggaagcaacgatggagatgatgatggtgttgacagtgatgaagaggtatggaggagtgaaacacatgaggaagaagttccataggagagtga |
231 |
Q |
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| T |
3036866 |
aatctggaggaagcaacgatggagatgatgatggtgttgacagtgatgaagaggtatggaggagtgaaacacatgaggaagaagttccataggagagtga |
3036965 |
T |
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| Q |
232 |
ggttagtggtggctgatggaagagaagattttaatcctaacgccgtgaaaataacggcagaggaaataagaagaagtttgagagaaagcataattatgtt |
331 |
Q |
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| T |
3036966 |
ggttagtggtggctgatggaagagaagattttaatcctaaagccgtgaaaataacggcagaggaaataagaagaagtttgagagaaagcataattgtgtt |
3037065 |
T |
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| Q |
332 |
gtgttttgagtttgaagaggagagtaattgtatagcacagtgatgaatgatgatg |
386 |
Q |
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| T |
3037066 |
gtgttttgagtttgaagaggagagtaattgtatagcacactgatgaatgatgatg |
3037120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 7437364 - 7437478
Alignment:
| Q |
140 |
ggaagcaacgatggagatgatgatggtgttgacagtgatgaagaggtatggaggagtgaaacacatgaggaagaagttccataggagagtgaggttagtg |
239 |
Q |
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| T |
7437364 |
ggaagcaacaatggagaagatgatggtgttgacagtaacgaagaggtatggaagagtgaagcataagaggaagaagttccataggaaagtgaggttagtg |
7437463 |
T |
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| Q |
240 |
gtggctgatggaaga |
254 |
Q |
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| T |
7437464 |
gtggctgatggaaga |
7437478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 28561941 - 28561858
Alignment:
| Q |
116 |
agtgtgagagtggtgaaatctggaggaagcaacgatggagatgatgatggtgttgacagtgatgaagaggtatggaggagtgaa |
199 |
Q |
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| T |
28561941 |
agtgtgggattggtgaaatctggaggaagcaacaatggagatgatgatggcgttgaaggtaacgaagaggtatggaggagtgaa |
28561858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 37883414 - 37883324
Alignment:
| Q |
112 |
gttgagtgtgagagtggtgaaatctggaggaagcaacgatggagatgatgatggtgttgacagtgatgaagaggtatggaggagtgaaaca |
202 |
Q |
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| T |
37883414 |
gttgagtgtgggattggtgaaatctggaggaagcaacaatggagatgatgatggcgttgaaggtaacgaagaggtatggaggagtgaaaca |
37883324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 37883310 - 37883209
Alignment:
| Q |
250 |
gaagagaagattttaatcctaacgccgtgaaaataacggcagaggaaataagaagaagtttgagagaaagcataatt-atgttgtgttttgagtttgaag |
348 |
Q |
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||||||||| ||| |||| |||| ||||||||||| | | ||||||| | |||||||||||||||| ||||||| | |||||||| |||||||||| |
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| T |
37883310 |
gaagagaagttttcaatctcaacgttgtgaaaataacagtaaaggaaatgaagagaagtttgagagaaaacataattgagtttgtgtttagagtttgaag |
37883211 |
T |
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| Q |
349 |
ag |
350 |
Q |
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|| |
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| T |
37883210 |
ag |
37883209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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