View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16878_high_4 (Length: 238)

Name: NF16878_high_4
Description: NF16878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16878_high_4
NF16878_high_4
[»] chr4 (15 HSPs)
chr4 (12-183)||(51301183-51301354)
chr4 (182-238)||(43202382-43202438)
chr4 (182-238)||(53003954-53004011)
chr4 (174-233)||(54054665-54054725)
chr4 (178-238)||(16536179-16536240)
chr4 (181-238)||(50619217-50619274)
chr4 (190-238)||(54655883-54655931)
chr4 (176-238)||(4089273-4089336)
chr4 (184-238)||(12356375-12356430)
chr4 (183-233)||(16820988-16821039)
chr4 (179-233)||(29591325-29591380)
chr4 (181-224)||(34151267-34151310)
chr4 (184-238)||(43944638-43944692)
chr4 (183-224)||(11893400-11893441)
chr4 (185-220)||(16572488-16572524)
[»] chr2 (11 HSPs)
chr2 (174-238)||(20553062-20553127)
chr2 (182-238)||(34442531-34442587)
chr2 (184-238)||(22887881-22887936)
chr2 (176-238)||(31438777-31438840)
chr2 (184-238)||(30486341-30486396)
chr2 (181-238)||(561515-561573)
chr2 (185-238)||(2898202-2898256)
chr2 (181-238)||(22567733-22567791)
chr2 (185-233)||(4022480-4022529)
chr2 (182-238)||(28601097-28601154)
chr2 (183-238)||(22068319-22068375)
[»] chr8 (14 HSPs)
chr8 (183-238)||(27988499-27988554)
chr8 (183-238)||(28045801-28045856)
chr8 (177-238)||(13643142-13643204)
chr8 (177-238)||(13743567-13743629)
chr8 (179-224)||(42655272-42655317)
chr8 (190-238)||(28626899-28626947)
chr8 (178-224)||(2490151-2490198)
chr8 (192-238)||(7304526-7304573)
chr8 (184-238)||(16394061-16394116)
chr8 (184-238)||(20831553-20831608)
chr8 (184-238)||(34228813-34228868)
chr8 (184-238)||(24843280-24843334)
chr8 (184-238)||(43119348-43119402)
chr8 (178-233)||(30675567-30675623)
[»] chr6 (9 HSPs)
chr6 (181-238)||(392227-392285)
chr6 (184-238)||(35044020-35044074)
chr6 (181-238)||(13416957-13417014)
chr6 (181-238)||(32929505-32929563)
chr6 (190-238)||(3026015-3026064)
chr6 (181-238)||(25165410-25165468)
chr6 (181-238)||(29978363-29978420)
chr6 (190-238)||(32985199-32985248)
chr6 (202-238)||(22417324-22417360)
[»] chr5 (5 HSPs)
chr5 (174-238)||(34650823-34650888)
chr5 (182-238)||(35132652-35132709)
chr5 (181-238)||(35504238-35504295)
chr5 (179-238)||(11957962-11958022)
chr5 (183-238)||(13661939-13661995)
[»] chr3 (9 HSPs)
chr3 (178-238)||(43787002-43787063)
chr3 (177-238)||(52520812-52520874)
chr3 (184-233)||(7468546-7468595)
chr3 (181-233)||(18014808-18014861)
chr3 (191-238)||(49893462-49893510)
chr3 (184-238)||(272351-272406)
chr3 (180-238)||(39074549-39074608)
chr3 (181-238)||(4168314-4168372)
chr3 (182-238)||(40362578-40362635)
[»] chr1 (11 HSPs)
chr1 (178-238)||(5694452-5694513)
chr1 (181-238)||(18043293-18043351)
chr1 (181-238)||(29657902-29657960)
chr1 (182-238)||(47010124-47010181)
chr1 (180-238)||(15227870-15227929)
chr1 (183-233)||(29210530-29210581)
chr1 (182-224)||(14350277-14350319)
chr1 (181-238)||(42769987-42770045)
chr1 (181-238)||(51065745-51065803)
chr1 (174-238)||(38162981-38163046)
chr1 (189-225)||(17333426-17333462)
[»] chr7 (7 HSPs)
chr7 (181-224)||(19434639-19434682)
chr7 (183-238)||(42044293-42044348)
chr7 (185-238)||(11686324-11686377)
chr7 (181-238)||(12218434-12218491)
chr7 (184-238)||(24438608-24438663)
chr7 (178-224)||(34556886-34556931)
chr7 (165-213)||(24798559-24798607)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 51301183 - 51301354
Alignment:
Q  12 tggaactgttcataagagcaatgatgagaatgaataagacatgtgaccaagaaaatgggcattataaaaacgtgatgtgggcattgagttccctacctca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51301183 tggaactgttcataagagcaatgatgagaatgaataagacatgtgaccaagaaaatgggcattataaaaacgtgatgtgggcattgagttccctacctca 51301282  T
Q  112 agagacaacatagacaaaatcatgttatgagactaagattttattagaaaaggagaagcatgaaataaataa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51301283 agagacaacatagacaaaatcatgttatgagactaagattttattagaaaaggagaagcatgaaataaataa 51301354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 43202382 - 43202438
Alignment:
Q  182 aagggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    ||||||| ||||||||||||||||||||||||| |||||| || |||||||||||||    
T  43202382 aagggtcctgctaaccggtgcccccgggcactggttaagcttaccataaaagagaat 43202438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 53003954 - 53004011
Alignment:
Q  182 aagggtcatgctaaccggtgcccccggg-cactgattaagcatatcataaaagagaat 238  Q
    ||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  53003954 aagggtcctgctaaccggtgtcccggggacactgattaagcatatcataaaagagaat 53004011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 54054725 - 54054665
Alignment:
Q  174 aaataaataagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaag 233  Q
    ||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| ||||||||    
T  54054725 aaataaataagggtcctgccaaccggtgcccccggggcactggttaagcataccataaaag 54054665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 16536240 - 16536179
Alignment:
Q  178 aaataagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||| ||| ||||||| |||||    
T  16536240 aaataagggtcctgctaaccggtgcccccggggcactggttaagaataccataaaatagaat 16536179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 50619274 - 50619217
Alignment:
Q  181 taagggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||  ||||||||||||||| |||||||| ||||||||| |||||||| ||||    
T  50619274 taagggtcccgctaaccggtgcccctgggcactggttaagcataccataaaagggaat 50619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 54655883 - 54655931
Alignment:
Q  190 tgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    |||||||||||||||| || ||||| ||||||||||||||| |||||||    
T  54655883 tgctaaccggtgccccgggacactggttaagcatatcataagagagaat 54655931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 4089336 - 4089273
Alignment:
Q  176 ataaataagggtcatgctaaccggtgcccc-cgggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||||||| ||||||| ||||||||  |||||||| |||| |||| |||||||||||||    
T  4089336 ataaataagggtcctgctaactggtgcccctggggcactggttaaacataccataaaagagaat 4089273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 12356430 - 12356375
Alignment:
Q  184 gggtcatgctaaccggtgcccccggg-cactgattaagcatatcataaaagagaat 238  Q
    ||||| |||||||||||||||||||  ||||| ||||||||| |||||||||||||    
T  12356430 gggtcctgctaaccggtgcccccggaacactggttaagcataccataaaagagaat 12356375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 16821039 - 16820988
Alignment:
Q  183 agggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaag 233  Q
    |||||| ||||||||||||||||| |||||||| ||||||||| ||||||||    
T  16821039 agggtcctgctaaccggtgcccccggggcactggttaagcataccataaaag 16820988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 29591380 - 29591325
Alignment:
Q  179 aataagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaag 233  Q
    |||||||||| ||||||||||||||||| |||||||  ||||||||| ||||||||    
T  29591380 aataagggtcctgctaaccggtgcccccggggcactagttaagcataccataaaag 29591325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 34151310 - 34151267
Alignment:
Q  181 taagggtcatgctaaccggtgcccccgggcactgattaagcata 224  Q
    |||||||||||||||||||||| ||||||||| | |||||||||    
T  34151310 taagggtcatgctaaccggtgctcccgggcacgggttaagcata 34151267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 43944692 - 43944638
Alignment:
Q  184 gggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    ||||| ||||||||||||||| ||||||||| ||||||||| |||| ||| ||||    
T  43944692 gggtcttgctaaccggtgccctcgggcactggttaagcataccatacaagggaat 43944638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 11893400 - 11893441
Alignment:
Q  183 agggtcatgctaaccggtgcccccgggcactgattaagcata 224  Q
    |||||||||||||||||||| || |||||||| |||||||||    
T  11893400 agggtcatgctaaccggtgctccggggcactggttaagcata 11893441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 16572488 - 16572524
Alignment:
Q  185 ggtcatgctaaccggtgccccc-gggcactgattaag 220  Q
    |||||||||||||||||||||| ||||||||||||||    
T  16572488 ggtcatgctaaccggtgcccccggggcactgattaag 16572524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 20553127 - 20553062
Alignment:
Q  174 aaataaataagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||||| ||||    
T  20553127 aaataaataagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaat 20553062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 34442531 - 34442587
Alignment:
Q  182 aagggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||| |||||||| ||||    
T  34442531 aagggtcctgctaaccgatgcccccgggcactggttaagcataccataaaagggaat 34442587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 22887936 - 22887881
Alignment:
Q  184 gggtcatgctaaccggtgcccccgg-gcactgattaagcatatcataaaagagaat 238  Q
    |||||||||||| |||||||||||| |||||| ||||||||| |||||||||||||    
T  22887936 gggtcatgctaatcggtgcccccggagcactggttaagcataccataaaagagaat 22887881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 31438840 - 31438777
Alignment:
Q  176 ataaataagggtcatgctaaccggtg-cccccgggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||||||| |||||||||||| |||| |||||||| ||||||||| |||||||| ||||    
T  31438840 ataaataagggtcctgctaaccggtgtccccggggcactggttaagcataccataaaagggaat 31438777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 30486396 - 30486341
Alignment:
Q  184 gggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    ||||| ||||||||||||||||| |||||||| ||||||||| |||||||| ||||    
T  30486396 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaat 30486341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 561515 - 561573
Alignment:
Q  181 taagggtcatgctaaccggtgcccccgggc-actgattaagcatatcataaaagagaat 238  Q
    |||| ||| |||||||||||||| |||||  |||||||||||||| |||||||||||||    
T  561515 taagagtcctgctaaccggtgcctccggggtactgattaagcataccataaaagagaat 561573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 2898256 - 2898202
Alignment:
Q  185 ggtcatgctaaccggtgcccccggg-cactgattaagcatatcataaaagagaat 238  Q
    |||| |||||||||||||| ||||| |||||||||| |||| |||||||||||||    
T  2898256 ggtcctgctaaccggtgcctccgggacactgattaaacataccataaaagagaat 2898202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 22567791 - 22567733
Alignment:
Q  181 taagggtcatgctaaccggtgcccccgg-gcactgattaagcatatcataaaagagaat 238  Q
    |||||||| |||||||||||||||| || |||| | ||||||||| |||||||||||||    
T  22567791 taagggtcctgctaaccggtgcccctggagcacgggttaagcataccataaaagagaat 22567733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 4022480 - 4022529
Alignment:
Q  185 ggtcatgctaaccggtgcccccggg-cactgattaagcatatcataaaag 233  Q
    |||| |||||||||||||||||||| ||||| |||| |||||||||||||    
T  4022480 ggtcctgctaaccggtgcccccgggacactggttaaacatatcataaaag 4022529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 28601154 - 28601097
Alignment:
Q  182 aagggtcatgctaaccggtgcccccgg-gcactgattaagcatatcataaaagagaat 238  Q
    ||||||| ||||||||||||| ||| | |||||| ||||||||| |||||||||||||    
T  28601154 aagggtcctgctaaccggtgctcccagtgcactggttaagcataccataaaagagaat 28601097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 22068319 - 22068375
Alignment:
Q  183 agggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    |||||| |||||| |||||||||| |||||||| ||||||||| |||||||| ||||    
T  22068319 agggtcctgctaatcggtgcccccggggcactggttaagcataccataaaagggaat 22068375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 27988499 - 27988554
Alignment:
Q  183 agggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    |||||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  27988499 agggtcctgctaaccggtgcccccgggcactggttaagcataccataaaagggaat 27988554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 28045801 - 28045856
Alignment:
Q  183 agggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    |||||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  28045801 agggtcctgctaaccggtgcccccgggcactggttaagcataccataaaagggaat 28045856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 13643204 - 13643142
Alignment:
Q  177 taaataagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    |||||||||||| ||||||||||||| ||  |||||||| ||||||||| |||||||||||||    
T  13643204 taaataagggtcctgctaaccggtgctcctagggcactggttaagcataccataaaagagaat 13643142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 13743629 - 13743567
Alignment:
Q  177 taaataagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    |||||||||||| ||||||||||||| ||  |||||||| ||||||||| |||||||||||||    
T  13743629 taaataagggtcctgctaaccggtgctcctagggcactggttaagcataccataaaagagaat 13743567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 42655272 - 42655317
Alignment:
Q  179 aataagggtcatgctaaccggtgcccccgggcactgattaagcata 224  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||    
T  42655272 aataagggtcatgctaaccggtgccccagggcaccggttaagcata 42655317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 28626947 - 28626899
Alignment:
Q  190 tgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||| ||||    
T  28626947 tgctaaccggtgctcccggacactgattaagcataccataaaagggaat 28626899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 2490151 - 2490198
Alignment:
Q  178 aaataagggtcatgctaaccggtgcccccg-ggcactgattaagcata 224  Q
    |||||||||||||||||||||||||||||| ||||| | |||||||||    
T  2490151 aaataagggtcatgctaaccggtgcccccgaggcacgggttaagcata 2490198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 7304526 - 7304573
Alignment:
Q  192 ctaaccggtgcccccgg-gcactgattaagcatatcataaaagagaat 238  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||||    
T  7304526 ctaaccggtgcccccggagcactggttaagcataccataaaagagaat 7304573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 16394061 - 16394116
Alignment:
Q  184 gggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    ||||| ||||||||||||||||| ||||| || ||||||||| |||||||||||||    
T  16394061 gggtcctgctaaccggtgcccccggggcattggttaagcataccataaaagagaat 16394116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 20831553 - 20831608
Alignment:
Q  184 gggtcatgctaaccggtgcccccgg-gcactgattaagcatatcataaaagagaat 238  Q
    ||||| |||||||||||| ||| || |||||||||||||||| |||||||||||||    
T  20831553 gggtcctgctaaccggtgtcccgggagcactgattaagcataccataaaagagaat 20831608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 34228868 - 34228813
Alignment:
Q  184 gggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    ||||| ||||||||||||||||| |||||||| ||||||||| |||||||| ||||    
T  34228868 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaat 34228813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 24843280 - 24843334
Alignment:
Q  184 gggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    ||||| ||||||||||||| ||||   |||||||||||||| |||||||||||||    
T  24843280 gggtcctgctaaccggtgctcccgaatactgattaagcataccataaaagagaat 24843334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 43119402 - 43119348
Alignment:
Q  184 gggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    ||||| |||||||||||||||| || || || ||||||||| |||||||||||||    
T  43119402 gggtcctgctaaccggtgccccgggccattggttaagcataccataaaagagaat 43119348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 30675567 - 30675623
Alignment:
Q  178 aaataagggtcatgctaaccggtg-cccccgggcactgattaagcatatcataaaag 233  Q
    |||||| |||| |||||||||||| |||| |||||||| ||||||||| ||||||||    
T  30675567 aaataaaggtcctgctaaccggtgtccccggggcactggttaagcataccataaaag 30675623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 392285 - 392227
Alignment:
Q  181 taagggtcatgctaaccggtgcccccggg-cactgattaagcatatcataaaagagaat 238  Q
    |||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||    
T  392285 taagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagagaat 392227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 35044074 - 35044020
Alignment:
Q  184 gggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    |||||||| ||||||||||||| |||||||| ||||||||| |||||||||||||    
T  35044074 gggtcatgttaaccggtgccccggggcactggttaagcataccataaaagagaat 35044020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 13416957 - 13417014
Alignment:
Q  181 taagggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||  ||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  13416957 taagggtccagctaaccggtgcctccgggcactggttaagcatattataaaagagaat 13417014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 32929505 - 32929563
Alignment:
Q  181 taagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||| |||||||| ||||    
T  32929505 taagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaat 32929563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 3026015 - 3026064
Alignment:
Q  190 tgctaaccggtgcccccggg-cactgattaagcatatcataaaagagaat 238  Q
    ||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  3026015 tgctaaccggtgccctcgggacactgattaagcataccataaaagagaat 3026064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 25165410 - 25165468
Alignment:
Q  181 taagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    |||||||| ||||||||||||| ||| ||||| || ||||||||||| |||||||||||    
T  25165410 taagggtcctgctaaccggtgctcccagggcattggttaagcatatcgtaaaagagaat 25165468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 29978420 - 29978363
Alignment:
Q  181 taagggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    |||||||| ||||||||||||  || |||| ||| |||||||||||||||||| ||||    
T  29978420 taagggtcctgctaaccggtgttccagggcgctggttaagcatatcataaaagggaat 29978363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 32985199 - 32985248
Alignment:
Q  190 tgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||||||||||| |||||||| ||||||||| |||||||| ||||    
T  32985199 tgctaaccggtgcccccggggcactggttaagcataccataaaagggaat 32985248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 22417360 - 22417324
Alignment:
Q  202 cccccgggcactgattaagcatatcataaaagagaat 238  Q
    |||| |||||||||||||||||| |||||||||||||    
T  22417360 ccccggggcactgattaagcataccataaaagagaat 22417324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 34650823 - 34650888
Alignment:
Q  174 aaataaataagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    |||||||| |||||| ||||||||||||||||| |||||||| ||||||||| |||||||| ||||    
T  34650823 aaataaattagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaat 34650888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 35132709 - 35132652
Alignment:
Q  182 aagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    ||||||| ||||||||||||||||| ||||| || ||||||||| |||||||||||||    
T  35132709 aagggtcctgctaaccggtgcccccggggcattggttaagcataccataaaagagaat 35132652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 35504238 - 35504295
Alignment:
Q  181 taagggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    |||||||| ||||||||||||||||||| ||| | ||||||||| |||||||| ||||    
T  35504238 taagggtcctgctaaccggtgcccccggacacgggttaagcataccataaaagggaat 35504295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 11957962 - 11958022
Alignment:
Q  179 aataagggtcatgctaaccggtgcccc-cgggcactgattaagcatatcataaaagagaat 238  Q
    |||||||||| ||||||||||||||||  |||||||| ||||||||  |||||||| ||||    
T  11957962 aataagggtcctgctaaccggtgcccctggggcactggttaagcatgccataaaagggaat 11958022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 13661995 - 13661939
Alignment:
Q  183 agggtcatgctaaccggtgcccccggg-cactgattaagcatatcataaaagagaat 238  Q
    |||||| |||||||||||||| ||||| ||| | ||||||||| |||||||||||||    
T  13661995 agggtcctgctaaccggtgcctccggggcacgggttaagcataccataaaagagaat 13661939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 43787063 - 43787002
Alignment:
Q  178 aaataagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||| |||||    
T  43787063 aaataagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaatagaat 43787002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 52520874 - 52520812
Alignment:
Q  177 taaataagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    |||| ||||||| ||||||||||||||||| |||||||| ||||||||| ||||||| |||||    
T  52520874 taaaaaagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaatagaat 52520812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 7468595 - 7468546
Alignment:
Q  184 gggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaag 233  Q
    ||||| ||||||||||||| || |||||||||||||||||| ||||||||    
T  7468595 gggtcctgctaaccggtgctccggggcactgattaagcataccataaaag 7468546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 18014861 - 18014808
Alignment:
Q  181 taagggtcatgctaaccggtgcccccggg-cactgattaagcatatcataaaag 233  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||    
T  18014861 taagggtcttgctaactggtgcccccggggcactgattaagcataccataaaag 18014808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 49893510 - 49893462
Alignment:
Q  191 gctaaccggtgcccccggg-cactgattaagcatatcataaaagagaat 238  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| ||||    
T  49893510 gctaaccggtgcccccggggcactgattaagcataccataaaagggaat 49893462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 272406 - 272351
Alignment:
Q  184 gggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    ||||| ||||||||||||||||| |||||| ||||||||||| |||||||| ||||    
T  272406 gggtcctgctaaccggtgcccccggggcaccgattaagcataccataaaagggaat 272351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 39074608 - 39074549
Alignment:
Q  180 ataagggtcatgctaaccggtgcccc-cgggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||| ||||||||||||||||  |||||||| ||||||||| |||||||| ||||    
T  39074608 ataagggtcctgctaaccggtgcccctggggcactggttaagcataccataaaagggaat 39074549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 4168372 - 4168314
Alignment:
Q  181 taagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    |||||||| ||||||||||||||||| ||| || | ||||||||| |||||||||||||    
T  4168372 taagggtcctgctaaccggtgcccccggggtacgggttaagcataccataaaagagaat 4168314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 40362578 - 40362635
Alignment:
Q  182 aagggtcatgctaaccggtgcccccggg-cactgattaagcatatcataaaagagaat 238  Q
    ||||||| |||||| |||| |||||||| ||||| ||||||||| |||||||||||||    
T  40362578 aagggtcctgctaatcggtacccccggggcactggttaagcataccataaaagagaat 40362635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 5694513 - 5694452
Alignment:
Q  178 aaataagggtcatgctaaccggtgcccccgg-gcactgattaagcatatcataaaagagaat 238  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||| |||||||| ||||    
T  5694513 aaataagggtcctgctaaccggtgcccccggagcactggttaagcataccataaaagggaat 5694452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 18043351 - 18043293
Alignment:
Q  181 taagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||| ||||||| |||||    
T  18043351 taagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaatagaat 18043293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 29657960 - 29657902
Alignment:
Q  181 taagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||| |||||||| ||||    
T  29657960 taagggtcctgctaaccggtgcccccagggcactggttaagcataccataaaagggaat 29657902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 47010181 - 47010124
Alignment:
Q  182 aagggtcatgctaaccggtgcccccgg-gcactgattaagcatatcataaaagagaat 238  Q
    ||||||| |||||||||||||||| || |||||| ||||||||| |||||||||||||    
T  47010181 aagggtcctgctaaccggtgcccctggagcactggttaagcataccataaaagagaat 47010124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 15227929 - 15227870
Alignment:
Q  180 ataagggtcatgctaaccggtgcc-cccgggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||| |||||||||||||| || |||||||| ||||||||| |||||||| ||||    
T  15227929 ataagggtcttgctaaccggtgcctccggggcactggttaagcataccataaaagggaat 15227870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 29210581 - 29210530
Alignment:
Q  183 agggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaag 233  Q
    |||||| ||||||||||||||||| |||||||| ||||||||| ||||||||    
T  29210581 agggtcctgctaaccggtgcccccggggcactggttaagcataccataaaag 29210530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 14350277 - 14350319
Alignment:
Q  182 aagggtcatgctaaccggtgcccccgggcactgattaagcata 224  Q
    ||||||| |||||||||||||||| |||||||| |||||||||    
T  14350277 aagggtcctgctaaccggtgccccggggcactggttaagcata 14350319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 42769987 - 42770045
Alignment:
Q  181 taagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    |||||||  ||||||||||||||||| |||||||| ||||||||| ||||||| |||||    
T  42769987 taagggttctgctaaccggtgcccccggggcactggttaagcataccataaaatagaat 42770045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 51065745 - 51065803
Alignment:
Q  181 taagggtcatgctaaccggtgcccc-cgggcactgattaagcatatcataaaagagaat 238  Q
    |||||||| ||||||||||||||||  |||||||| ||||||||| |||||||| ||||    
T  51065745 taagggtcctgctaaccggtgcccctggggcactggttaagcataccataaaagggaat 51065803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 38163046 - 38162981
Alignment:
Q  174 aaataaataagggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    ||||||| || |||| ||||||||||||||||| |||||| | ||||||||| |||||||| ||||    
T  38163046 aaataaaaaaaggtcctgctaaccggtgcccccggggcacgggttaagcataccataaaagggaat 38162981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 17333462 - 17333426
Alignment:
Q  189 atgctaaccggtgcccccgggcactgattaagcatat 225  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  17333462 atgctaaccggtgcccccgggcactggttaaggatat 17333426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 19434682 - 19434639
Alignment:
Q  181 taagggtcatgctaaccggtgcccccgggcactgattaagcata 224  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  19434682 taagggtcatgctgaccggtgcccccgggcactggttaagcata 19434639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 42044293 - 42044348
Alignment:
Q  183 agggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    ||||||||||||||||||||||| |||||||| |||| |||| |||||||| ||||    
T  42044293 agggtcatgctaaccggtgccccggggcactggttaaacataccataaaagggaat 42044348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 11686324 - 11686377
Alignment:
Q  185 ggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    |||| |||||||||||||| ||||| || | |||||||||||||||||||||||    
T  11686324 ggtcctgctaaccggtgcctccgggtacaggttaagcatatcataaaagagaat 11686377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 12218434 - 12218491
Alignment:
Q  181 taagggtcatgctaaccggtgcccccgggcactgattaagcatatcataaaagagaat 238  Q
    |||||||| |||||||||||| ||| |||||||| |||| |||| |||||||||||||    
T  12218434 taagggtcctgctaaccggtgtcccggggcactggttaaacataccataaaagagaat 12218491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 24438663 - 24438608
Alignment:
Q  184 gggtcatgctaaccggtgccccc-gggcactgattaagcatatcataaaagagaat 238  Q
    ||||| ||||||||||||||||| |||||||| ||||||||| |||||||| ||||    
T  24438663 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaat 24438608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 34556886 - 34556931
Alignment:
Q  178 aaataagggtcatgctaaccggtgcccccgggcactgattaagcata 224  Q
    |||| ||||||||||||||||||| |||||||||||| |||||||||    
T  34556886 aaattagggtcatgctaaccggtg-ccccgggcactggttaagcata 34556931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 24798607 - 24798559
Alignment:
Q  165 agaagcatgaaataaataagggtcatgctaaccggtgcccccgggcact 213  Q
    |||| ||| ||| |||||||||  |||||||||||||||||||||||||    
T  24798607 agaatcattaaaaaaataagggaaatgctaaccggtgcccccgggcact 24798559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University