View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16878_high_6 (Length: 233)
Name: NF16878_high_6
Description: NF16878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16878_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 12940031 - 12940238
Alignment:
| Q |
15 |
aatatgtaatagagagggtgagagtaaaaataagaagaaagagtcaagatattaattcgaggctgatcactcaaactaagtgtcctgcaaggcttcgagt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12940031 |
aatatgtaatagagagggtgagagtaaaaataagaagaaacaatcaagatattaatttgaggctgatcactcaaactaagtgtcctgcaaggcttcgagt |
12940130 |
T |
|
| Q |
115 |
agttttaaatgttgatattgataagtggagagtttttgtaatcaagccgacacattatgattcttaagtatcgtcgatcaagtgaatctgaatatgccct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12940131 |
agttttaaatgttgatattgataagtggagagtttttgtaatcaagccaacacattatgattcttaagtatcgtcgatcaagtgaatctgaatatgccct |
12940230 |
T |
|
| Q |
215 |
tgatgatg |
222 |
Q |
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|||||||| |
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| T |
12940231 |
tgatgatg |
12940238 |
T |
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