View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16878_low_1 (Length: 542)
Name: NF16878_low_1
Description: NF16878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16878_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 123 - 536
Target Start/End: Complemental strand, 24481335 - 24480922
Alignment:
| Q |
123 |
tactactacaaacctataccccctccatatgtttatgagtctccaccatatatctataaatccccaccacccgctccctatgtttataaatctcctcctt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24481335 |
tactactacaaacctataccccctccatatgtttatgagtctccaccatatatctataaatccccaccacccgctccctatgtttataaatctcctcctt |
24481236 |
T |
|
| Q |
223 |
acgtttacaaatccccacctacaccatataagccctaccaatatagttcacctccaccccctgtgtattaagcttgatgacatatgcattttgactcctt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24481235 |
acgtttacaaatccccacctacaccatataagccctaccaatatagttcacctccaccccctgtgtattaagcttgatgacatatgcattttgactcctt |
24481136 |
T |
|
| Q |
323 |
ccaatagttatactatgatcattgttgtgttgtttgtattgcaataaagttttcattagtaataaaagtctgctctgtaataaagctatgctttggactc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24481135 |
ccaatagttatactatgatcattgttgtgttgtttgtattgcaataaagttttcattagtaataaaagtctgctctgtaataaagctatgctttggactc |
24481036 |
T |
|
| Q |
423 |
catgttgtatcattttgtataagtgttatttcagaagcgtattttaatctgttttatcaaatttcatatactgatatatagtttcgtatttgttgttgct |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24481035 |
catgttgtatcattttgtataagtgttatttcagaagcgtattttaatctgttttatcaaatttcatatactgatatatagtttcgtatttgttgttgct |
24480936 |
T |
|
| Q |
523 |
aatcttgatgatgt |
536 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24480935 |
aatcttgatgatgt |
24480922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 24481437 - 24481402
Alignment:
| Q |
21 |
tacgaatcacctcctcctccacaatatgtctacaaa |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24481437 |
tacgaatcacctcctcctccacaatatgtctacaaa |
24481402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University