View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16878_low_3 (Length: 403)
Name: NF16878_low_3
Description: NF16878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16878_low_3 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Complemental strand, 11849980 - 11849597
Alignment:
| Q |
10 |
catcatcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccct |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849980 |
catcttcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccct |
11849881 |
T |
|
| Q |
110 |
cccttcaacgacattgggtgagtcatcctaatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg |
209 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849880 |
cccttcaacgacattgggtgagtcatcctcatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg |
11849781 |
T |
|
| Q |
210 |
cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
11849780 |
cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctgcattcatctttttggttgttccagt |
11849681 |
T |
|
| Q |
310 |
tccaacatacatcttcttcaaaaatcacatccttattaatgattactttcttggaaactggatcatatagtttgtaggcctttg |
393 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849680 |
tccaacatacatcttcttcaaaaatcacatccttactaatgattactttcttggaaactggatcatatagtttgtaggcctttg |
11849597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 393
Target Start/End: Complemental strand, 5876640 - 5876271
Alignment:
| Q |
10 |
catcatcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccct |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
5876640 |
catcttcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatatgccatccatgaaggtttttttcttaccct |
5876541 |
T |
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| Q |
110 |
cccttcaacgacattgggtgagtcatcctaatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg |
209 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5876540 |
cccttcaacgacattgggtgagtcatcctcatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg |
5876441 |
T |
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| Q |
210 |
cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
5876440 |
cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttcca--------------gcctgcattcatctttttggttgtcccagt |
5876355 |
T |
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| Q |
310 |
tccaacatacatcttcttcaaaaatcacatccttattaatgattactttcttggaaactggatcatatagtttgtaggcctttg |
393 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5876354 |
tccaacatacatcttcttcaaaaatcacatccttactaatgattactttcttggaaactggatcatatagtttgtaggcctttg |
5876271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 393
Target Start/End: Complemental strand, 26554328 - 26554170
Alignment:
| Q |
235 |
cttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagttccaacatacatcttcttcaaaaat |
334 |
Q |
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||||||||||| |||| |||||||||| ||||||||| ||| | |||||||| ||||| ||||||| ||||| ||| |||||||||||||||| |
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| T |
26554328 |
cttcaatgtcattctcggaatcatttttgaactctaaaacatccagactacattcctctttgcttctgtcccaattccagcattcatcttcttcaaaaat |
26554229 |
T |
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| Q |
335 |
cacatccttattaatgattactttcttggaaactggatcatatagtttgtaggcctttg |
393 |
Q |
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|||||| || ||||||||| ||||||||||| ||||||||||| |||||||||||| |
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| T |
26554228 |
cacatctttgctaatgattattttcttggaaattggatcatataacctgtaggcctttg |
26554170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 26554527 - 26554438
Alignment:
| Q |
27 |
atcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccctcccttca |
116 |
Q |
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| T |
26554527 |
atcattgcattcataccatcttcatctgacaaaccttcacctgtttcatagtcttccatccaacacggtggtcttcttaccctcccttca |
26554438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 1606 - 1681
Alignment:
| Q |
15 |
tcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg |
90 |
Q |
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|||| ||||||||||||||| |||| ||| || |||||||| | ||||| || ||||||||||||| |||||||| |
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| T |
1606 |
tcagtaaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg |
1681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 7050 - 7125
Alignment:
| Q |
15 |
tcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg |
90 |
Q |
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| T |
7050 |
tcagtaaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg |
7125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 14246376 - 14246301
Alignment:
| Q |
15 |
tcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg |
90 |
Q |
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|||| ||||||||||||||| |||| ||| || |||||||| | ||||| || ||||||||||||| |||||||| |
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| T |
14246376 |
tcagtaaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg |
14246301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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