View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16879_high_6 (Length: 226)
Name: NF16879_high_6
Description: NF16879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16879_high_6 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 13335717 - 13335568
Alignment:
| Q |
13 |
aacaaaatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttggagaccccaattagttacaggtgttgatattcccactgatacaata |
112 |
Q |
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| T |
13335717 |
aacaatatcatcgtcacctccaatatacaaacttgaaagagaagtaagatgttggagaccccattcagctacaggcgttgctattctcactgatcgaata |
13335618 |
T |
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| Q |
113 |
taaattgatcgtagttttggaggtaggcaggctccttcacaaaatggtaa |
162 |
Q |
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| T |
13335617 |
aaaatgcttcgtaatttgggaggtaggcaagctcctttacaaaatggtaa |
13335568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 8585615 - 8585673
Alignment:
| Q |
166 |
atgttcttctgaaagatcataaagagataaatgttcaagagcagtgatgatgtccatct |
224 |
Q |
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| T |
8585615 |
atgttcttcggaaagatcataaagagataaatgttcaagagcagtgagggtgtccatct |
8585673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 13173841 - 13173692
Alignment:
| Q |
13 |
aacaaaatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttggagaccccaattagttacaggtgttgatattcccactgatacaata |
112 |
Q |
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| T |
13173841 |
aacaatatcatcgtaacctcccatatacaaacttgaaagagaagtaagatgttggagaccccattcagctacaggcgttgctattctcactgattcaata |
13173742 |
T |
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| Q |
113 |
taaattgatcgtagttttggaggtaggcaggctccttcacaaaatggtaa |
162 |
Q |
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| T |
13173741 |
taaatacttcgtattttgggaggtaggcaagttcctttacaaaatggtaa |
13173692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 13346906 - 13346765
Alignment:
| Q |
21 |
catcgtcacctccaatactcaattttgaaagagaattcatgtgttggagaccccaattagttacaggtgttgatattcccactgatacaatataaattga |
120 |
Q |
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| T |
13346906 |
catcgttacctccaatatacaatcttgaaagagaagtaagatgttggagaccccatccatctacaggcgttgctattctcactgatttaatattaatact |
13346807 |
T |
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| Q |
121 |
tcgtagttttggaggtaggcaggctccttcacaaaatggtaa |
162 |
Q |
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| T |
13346806 |
tcgtaatttgggaggtaggcaagctcctttacaaaattgtaa |
13346765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 133147 - 133296
Alignment:
| Q |
13 |
aacaaaatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttggagaccccaattagttacaggtgttgatattcccactgatacaata |
112 |
Q |
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| T |
133147 |
aacaatatcatcgtaacctcccatatacaaacttgaaagagaagtaagatgttggagaccccattcagctacaggcgttgctattctcactgattcaata |
133246 |
T |
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| Q |
113 |
taaattgatcgtagttttggaggtaggcaggctccttcacaaaatggtaa |
162 |
Q |
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| T |
133247 |
taaatacttcgtattttgggaggtaggcaagttcctttacaaaatggtaa |
133296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 31677107 - 31677201
Alignment:
| Q |
64 |
ttggagaccccaattagttacaggtgttgatattcccactgatacaatataaattgatcgtagttttggaggtaggcaggctccttcacaaaatg |
158 |
Q |
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| T |
31677107 |
ttggagaccccatttaattacaggcgttgttattctcacggattcaatatgaaatgatcttaatttgggaggtaggcaagctccttcaccaaatg |
31677201 |
T |
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