View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16879_low_2 (Length: 338)
Name: NF16879_low_2
Description: NF16879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16879_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 36264210 - 36264516
Alignment:
| Q |
18 |
ggtagcactgaataatgtaaccatgattctcattgaagttgaggtaaaactatggttggtatgtgctttaatactgagaagtgcccctttcattacgttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36264210 |
ggtagcactgaataatgtaaccatgattctcattgaagttgaggtaaaactatggttggtatgtgctttgatactgagaagtgcccctttcattacgttt |
36264309 |
T |
|
| Q |
118 |
gtgtaccnnnnnnn-gtttcttctcccaacccgtcaagcacgtttgctagacatagcattgtggtccaatgtgatatactccttctatttctatcccata |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36264310 |
gtgtaccttttttttgtttcttctcccaacccgtcaagcacgtttgctagacatagcattgtggtccaatgtgatatactcct---atttctatcccata |
36264406 |
T |
|
| Q |
217 |
ataattgtcatatttgtaaaagaagaagattgtcccaaaaaattgtcacttttgtttatttgatattttttaattgtacccttaaattaatacaatttac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36264407 |
ataattgtcatatttgtaaaagaagaagattgtcccaaaaaattgtcacttttgtttatttgatattttttaattgtacctttaaattaatacaatttac |
36264506 |
T |
|
| Q |
317 |
accactccta |
326 |
Q |
| |
|
|||||||||| |
|
|
| T |
36264507 |
accactccta |
36264516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University