View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16879_low_3 (Length: 313)
Name: NF16879_low_3
Description: NF16879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16879_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 48676369 - 48676634
Alignment:
| Q |
1 |
ataaaataaactagaacctcaaaatcacctgggccactttgaagagattaatttgttctatttcaaaatatgtcaagctcaagcatgtgacatacattat |
100 |
Q |
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| T |
48676369 |
ataaaataaactagaacctcaaaatcacctgggccactttgaagagattaatttgttctatttcaaaatatgtcaagctcaagcatgtgacatacattat |
48676468 |
T |
|
| Q |
101 |
tattaaaagtggcgtgaggtctctaacaattaaggtggtgtacctacctgtaagcactctgaaactcaagtcgtaggtaaaaacaaatgtgtatcttgct |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48676469 |
tattaaaagtggcgtgaggtctctaac----aaggtggtgtacctacctgtaagcactctgaaactcaagtcgtaggtaaaaacgaatgtgtatcttgct |
48676564 |
T |
|
| Q |
201 |
taggatgtgatcatcttatacaatgggattgttgcgttgatatggtgggaaaatccataaaaggcgttaa |
270 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
48676565 |
taggatgtgatcatcttatacaatgggattgttgcattgatatggtgggaaaatccgtaaaaggcgttaa |
48676634 |
T |
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