View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16879_low_4 (Length: 290)
Name: NF16879_low_4
Description: NF16879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16879_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 28634512 - 28634223
Alignment:
| Q |
4 |
gttgagagagttgacaacatgactcttctctataaaaagaatttgtgttcaatctttagagttgctcagaagatctcgctaccaacttgaggtttaatct |
103 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
28634512 |
gttgagagagttgacaacatgactcttctctacaaaaagaatttgtgttcaatctttagagtcgctctgaagatctcgctaccaacttgaggtttaatct |
28634413 |
T |
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| Q |
104 |
catagtgaccgtgagataccttgaaacacaaaggatcataga--ttcagatacatgagagcaaaacgaataaaatatatgaagaaatatagaaatgtttt |
201 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28634412 |
catagtgaccgtgagataccttaaaacacaaaggatcatagatctacatatacatgagagcaaaacgaataaaatatatgaa-aaatatagaaatgtttt |
28634314 |
T |
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| Q |
202 |
tgaattgataatgtcctttgg--------actatatatacttagtgtagtatagtacgatagtatacttttttattaaattgatgatgtcc |
284 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28634313 |
tgaattgataatgtcctttggactataatactatatatacttagtgtagtatagtacgatagtattcttttttattaaattgatgatgtcc |
28634223 |
T |
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