View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16879_low_5 (Length: 280)

Name: NF16879_low_5
Description: NF16879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16879_low_5
NF16879_low_5
[»] chr6 (2 HSPs)
chr6 (11-280)||(4953759-4954028)
chr6 (11-280)||(4938050-4938319)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 4954028 - 4953759
Alignment:
Q  11 catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctaccttgtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  4954028 catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatctcaaactccccaaaccattcaaatatcctgaaaggtatctaccttgtc 4953929  T
Q  111 ttttatattagattctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4953928 ttttatattagattatctgtaatcacgcaattccataaagatctgacagctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgt 4953829  T
Q  211 gtgcttgtttgaattgattttgacatgttttatgttatatggtagtttaattgattgttttggtataatt 280  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  4953828 gtgcttgtttgaattgattttgacatgttttatgttatctggtagtttaattgattgtttcggtataatt 4953759  T

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Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 4938319 - 4938050
Alignment:
Q  11 catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctaccttgtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  4938319 catcatcaactaccctccaatgaattgcgaaaacctgtcaccccatatcatctcaaactccccaaaccattcaaatatcttgaaaggtatctaccttgtc 4938220  T
Q  111 ttttatattagattctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4938219 ttttatattagattctctgtaatgacgcaattccataaagatccgacggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc 4938120  T
Q  211 gtgcttgtttgaattgattttgacatgttttatgttatatggtagtttaattgattgttttggtataatt 280  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  4938119 gtgcttatttgaattgattttgacatgttttatgttatctggtagtttaattgattgtttcggtataatt 4938050  T

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