View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16879_low_9 (Length: 210)

Name: NF16879_low_9
Description: NF16879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16879_low_9
NF16879_low_9
[»] chr7 (6 HSPs)
chr7 (19-185)||(39457871-39458037)
chr7 (19-187)||(39437232-39437400)
chr7 (19-187)||(39463401-39463569)
chr7 (25-187)||(39424209-39424371)
chr7 (133-177)||(19981470-19981514)
chr7 (151-187)||(47369008-47369044)
[»] chr1 (1 HSPs)
chr1 (116-179)||(43098423-43098486)
[»] chr3 (3 HSPs)
chr3 (135-188)||(7176148-7176201)
chr3 (126-178)||(13465547-13465599)
chr3 (126-178)||(14350675-14350727)
[»] chr4 (1 HSPs)
chr4 (129-179)||(38490494-38490544)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 39457871 - 39458037
Alignment:
Q  19 tgaagcgaaaggaatggattggtagtgtgatgtctcgccggtacatcgttgagtgcactccatcaagaaagagatcggaagtttcgatgcctccggagtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39457871 tgaagcgaaaggaatggattggtagtgtgatgtctcgccggtacatcgttgagtgcactccatcaagaaagagatcggaagtttcgatgcctccggagtc 39457970  T
Q  119 aaagtcaagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggttaca 185  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39457971 aaagtcgagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggttaca 39458037  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 39437400 - 39437232
Alignment:
Q  19 tgaagcgaaaggaatggattggtagtgtgatgtctcgccggtacatcgttgagtgcactccatcaagaaagagatcggaagtttcgatgcctccggagtc 118  Q
    |||||||||| ||||||||||||||||| || ||||| |||||||| |||||||  ||| |||  ||||||||||| ||||||| || ||| |  | |||    
T  39437400 tgaagcgaaacgaatggattggtagtgtaatttctcgacggtacatggttgagtaaactacatggagaaagagatcagaagttttgaagccgctagggtc 39437301  T
Q  119 aaagtcaagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggttacagc 187  Q
    |||||| || | ||||||||| |||||||   |||||||||||||||||||||| ||||||||| ||||    
T  39437300 aaagtcgagggagagaactgatagccacaatcgtttccatctctttgagaggacacttgtggttgcagc 39437232  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 39463401 - 39463569
Alignment:
Q  19 tgaagcgaaaggaatggattggtagtgtgatgtctcgccggtacatcgttgagtgcactccatcaagaaagagatcggaagtttcgatgcctccggagtc 118  Q
    |||||||||| ||||||||||||||||| || ||||| | |||||||||||||| |||| ||   |||||||| ||  |||||| || ||| | ||||||    
T  39463401 tgaagcgaaacgaatggattggtagtgtaatttctcgacagtacatcgttgagtacactacacggagaaagaggtcaaaagttttgaagccgctggagtc 39463500  T
Q  119 aaagtcaagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggttacagc 187  Q
    |||||| ||||  ||||| ||||||||||   ||||||||||||||||||| |||||||| ||| ||||    
T  39463501 aaagtcgagagaaagaacggagagccacaatcgtttccatctctttgagagaacgcttgtcgttgcagc 39463569  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 39424371 - 39424209
Alignment:
Q  25 gaaaggaatggattggtagtgtgatgtctcgccggtacatcgttgagtgcactccatcaagaaagagatcggaagtttcgatgcctccggagtcaaagtc 124  Q
    |||| |||||||||||||||| ||| ||||||||||| |||||||| | |||  ||  |||||||||||| ||||||| || ||  | ||||||||||||    
T  39424371 gaaacgaatggattggtagtgcgatatctcgccggtatatcgttgaatacaccacacgaagaaagagatcagaagttttgaagcggctggagtcaaagtc 39424272  T
Q  125 aagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggttacagc 187  Q
     | ||| ||||| || |||||||   |||||||||| ||||||||||| ||||||||| ||||    
T  39424271 gaaagctagaaccgaaagccacaatagtttccatctttttgagaggacacttgtggttgcagc 39424209  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 19981470 - 19981514
Alignment:
Q  133 gaactgagagccacacatgtttccatctctttgagaggacgcttg 177  Q
    ||||||||||||| |   |||||||||||||||||||||||||||    
T  19981470 gaactgagagccataatggtttccatctctttgagaggacgcttg 19981514  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 47369008 - 47369044
Alignment:
Q  151 gtttccatctctttgagaggacgcttgtggttacagc 187  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  47369008 gtttccatctctttgagagaacgcttgtggttgcagc 47369044  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 43098486 - 43098423
Alignment:
Q  116 gtcaaagtcaagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtg 179  Q
    ||||||||  ||||| |||||||||||||| || |||| |||||| ||||||||||||||||||    
T  43098486 gtcaaagtagagagcaagaactgagagccatacctgttcccatctttttgagaggacgcttgtg 43098423  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 7176148 - 7176201
Alignment:
Q  135 actgagagccacacatgtttccatctctttgagaggacgcttgtggttacagct 188  Q
    ||||||| ||||||   ||||||||||||||||||||||||||||||| |||||    
T  7176148 actgagatccacaccgatttccatctctttgagaggacgcttgtggttgcagct 7176201  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 13465547 - 13465599
Alignment:
Q  126 agagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgt 178  Q
    ||||||||||||||||||||||   || |||||| ||||||||||||||||||    
T  13465547 agagcgagaactgagagccacaatggtctccatcgctttgagaggacgcttgt 13465599  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 14350675 - 14350727
Alignment:
Q  126 agagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgt 178  Q
    ||||||||||||||| ||||||   || |||||| ||||||||||||||||||    
T  14350675 agagcgagaactgagcgccacaatggtctccatcgctttgagaggacgcttgt 14350727  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 38490494 - 38490544
Alignment:
Q  129 gcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtg 179  Q
    ||||| ||||||||||||||   |||||||||||||||||||| |||||||    
T  38490494 gcgaggactgagagccacaccgatttccatctctttgagaggaagcttgtg 38490544  T

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