View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1687_high_12 (Length: 585)

Name: NF1687_high_12
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1687_high_12
NF1687_high_12
[»] chr2 (4 HSPs)
chr2 (13-504)||(36141601-36142093)
chr2 (41-95)||(32592574-32592628)
chr2 (85-131)||(32592642-32592688)
chr2 (23-96)||(5745812-5745885)
[»] chr6 (2 HSPs)
chr6 (182-379)||(1335736-1335935)
chr6 (10-122)||(1335547-1335659)
[»] chr4 (1 HSPs)
chr4 (25-111)||(42404010-42404096)
[»] chr1 (3 HSPs)
chr1 (25-95)||(17603412-17603482)
chr1 (35-95)||(3234043-3234103)
chr1 (39-95)||(42174841-42174897)
[»] chr5 (1 HSPs)
chr5 (25-95)||(16937911-16937981)
[»] chr3 (3 HSPs)
chr3 (25-95)||(20170495-20170565)
chr3 (25-95)||(39980701-39980771)
chr3 (35-95)||(47132313-47132373)
[»] chr7 (2 HSPs)
chr7 (35-95)||(4970821-4970881)
chr7 (35-95)||(46280300-46280360)


Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Complemental strand, 36142093 - 36141601
Alignment:
Q  13 aagaatatgtataataacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaattgtcgtaagctgttttt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36142093 aagaatatgtataataacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttggggacttatgaaaattgtcgtaagctgttttt 36141994  T
Q  113 ataagctctcacaaatagagtcttacaacatttatgtcagtagattcgttcaaataagatatgttagcgtaaaagtgtatgtccattagactctttactt 212  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36141993 ataagctctcgcaaacagagtcttacaacatttatgtcagtagattcgttcaaataagatatgttagcgtaaaagtgtatgtccattagactctttactt 36141894  T
Q  213 taaagtagtcaaattcttaaattttatggtgagcacttctgaaccctggagttttgttcgtgggtattcataattcaattatttaattttatgttacttt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36141893 taaagtagtcaaattcttaaattttatggtgagcacttctgaatcctggagttttgttcgtgggtattcataattcaattatttaattttatgttatttt 36141794  T
Q  313 ttgtatttatcctnnnnnnnntgttattttttatagtaaatatcattttgaattagttttgctaaggacctaaggtacttaagaa-tttccatannnnnn 411  Q
    |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||          
T  36141793 ttgtatttatcctaaaaaaaatgttattttttatagtaaatatcattttgaattagttttgctaaggacctaagttacttaagaattttccatatttttt 36141694  T
Q  412 nnattctttaaaagtttaacaaattagacactatgaaataatggaaataatatttgacagcaaatattaggtggagacagcataaacattctg 504  Q
      |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  36141693 ttattctttaaaagtttaacaaattagacactgtgaaataatggaaataatatttgacaccaaatattatgtggagacagcataaacattctg 36141601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 32592574 - 32592628
Alignment:
Q  41 ttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 95  Q
    |||||||||||||||| |||| ||||||||| |||||| ||| ||||||||||||    
T  32592574 ttttgtatacgctataagttgtttttataagcaatattggagaacttatgaaaat 32592628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 32592642 - 32592688
Alignment:
Q  85 cttatgaaaattgtcgtaagctgtttttataagctctcacaaataga 131  Q
    |||||||||||||||||||||| |||| ||||| |||| ||||||||    
T  32592642 cttatgaaaattgtcgtaagctattttcataagttctcccaaataga 32592688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 5745885 - 5745812
Alignment:
Q  23 ataataacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaatt 96  Q
    ||||||||| | |||||||||| |||| |||||| |||  || ||||||  ||||||||||||||| |||||||    
T  5745885 ataataacgctgaattgtttttttatatgctataagttatttctataagctatatttgaggacttaggaaaatt 5745812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 182 - 379
Target Start/End: Original strand, 1335736 - 1335935
Alignment:
Q  182 taaaagtgtatgtccattagactctttactttaaagtagtcaaattcttaaattttatggtgagcacttctgaaccctggagttttgttcgtgggtattc 281  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||||| ||||| ||||||||||| | ||||| |||||||||||| |   ||||||    
T  1335736 taaaagtgtatgtccattggactctttactt--aagtagtcaaattcttatattttgtggtgagcactccggaaccttggagttttgtttgcatgtattc 1335833  T
Q  282 ataattcaatta-tttaattttatgttactttttgtatttatcc-tnnnnnnnntgtta--ttttttatagtaaatatcattttgaattagttttgctaa 377  Q
    || || |||||| |||||||| |||||| ||||||||||||||| |        |||||  |||||||||||||||||||||||||||||||||||||||    
T  1335834 atcatccaattattttaatttcatgttattttttgtatttatccataaaaaaaatgttattttttttatagtaaatatcattttgaattagttttgctaa 1335933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 1335547 - 1335659
Alignment:
Q  10 tcgaagaatatgtataataacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaattgtcgtaagctgtt 109  Q
    |||||||||||||| |||||| ||| ||||||||| || || ||||||||| ||||||||| | || ||||||||||||||||||||||| || |||| |    
T  1335547 tcgaagaatatgtacaataacattcgattgtttttttacacactatatgttcgttttataaattatctttgaggacttatgaaaattgtcataggctgct 1335646  T
Q  110 tttataagctctc 122  Q
    ||| |||||||||    
T  1335647 tttgtaagctctc 1335659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 42404096 - 42404010
Alignment:
Q  25 aataacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaattgtcgtaagctgtttt 111  Q
    ||||| ||| ||||||||||||| | ||| || | || |||||||||  |||||||||  ||||||||||||||| |||||||||||    
T  42404096 aataatgttaaattgtttttgtacatgctgtaagctgtttttataagccatatttgagtgcttatgaaaattgtcataagctgtttt 42404010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 17603482 - 17603412
Alignment:
Q  25 aataacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 95  Q
    ||||||||| ||||||||||||||| |||||| |||| |||||||||  ||||| ||| |||| |||||||    
T  17603482 aataacgttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttctgaaaat 17603412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 3234103 - 3234043
Alignment:
Q  35 aattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 95  Q
    ||||||||||||||| |||||| |||| |||||||||  ||||| ||| ||||||||||||    
T  3234103 aattgtttttgtatatgctataagttgtttttataagctatattggagaacttatgaaaat 3234043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 42174841 - 42174897
Alignment:
Q  39 gtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 95  Q
    ||||||||||| |||||| |||| |||||||||| ||||| ||| ||||||||||||    
T  42174841 gtttttgtatatgctataagttgtttttataagttatattggagaacttatgaaaat 42174897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 16937981 - 16937911
Alignment:
Q  25 aataacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 95  Q
    ||||||||| ||||||||||||||| |||||| |||| ||||||| |  ||||| ||| ||||| ||||||    
T  16937981 aataacgttaaattgtttttgtatatgctataagttgtttttatacgctatattggagaacttaggaaaat 16937911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 20170495 - 20170565
Alignment:
Q  25 aataacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 95  Q
    ||||| ||| ||||||||||||||| |||||| |||| ||||| |||| || |||||| ||| ||||||||    
T  20170495 aataatgttaaattgtttttgtatatgctataagttgtttttacaagttatttttgagaactaatgaaaat 20170565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 39980701 - 39980771
Alignment:
Q  25 aataacgttcaattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 95  Q
    ||||||||| ||||||||||| | | |||||| |||| |||||||||  ||||| ||| ||||||||||||    
T  39980701 aataacgttaaattgtttttgaacatgctataagttgtttttataagctatattggagaacttatgaaaat 39980771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 47132313 - 47132373
Alignment:
Q  35 aattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 95  Q
    ||||||||||||||| |||||| |||| |||||||||  ||||| ||| | ||||||||||    
T  47132313 aattgtttttgtatatgctataggttgtttttataagctatattggagaagttatgaaaat 47132373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 4970881 - 4970821
Alignment:
Q  35 aattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 95  Q
    ||||||||||||||| |||||| |||  |||||||||  ||||| ||| ||||||||||||    
T  4970881 aattgtttttgtatatgctataagttctttttataagatatattagagaacttatgaaaat 4970821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 46280360 - 46280300
Alignment:
Q  35 aattgtttttgtatacgctatatgttggttttataagtaatatttgaggacttatgaaaat 95  Q
    ||||||||||||||| |||||| | || |||||||||  ||||| ||| ||||||||||||    
T  46280360 aattgtttttgtatatgctataagctgtttttataagctatattggagaacttatgaaaat 46280300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University