View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_16 (Length: 480)
Name: NF1687_high_16
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 466
Target Start/End: Original strand, 45103536 - 45103989
Alignment:
| Q |
14 |
acagaacagaacacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataag |
113 |
Q |
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| T |
45103536 |
acagaacagaacacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataag |
45103635 |
T |
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| Q |
114 |
ttatactttatgnnnnnnnataaatcgtaaatcattatgatcaacnnnnnnnnn-tgttatgtatcatttatattttctcataaaccttgttttaacttt |
212 |
Q |
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| T |
45103636 |
ttatactttatgtttttttataaatcctaaatcattatgatcaacaaaaaaaaaatgttatgtatcatttatattttctcataaaccttgttttaacttt |
45103735 |
T |
|
| Q |
213 |
ttaactaactgtcattattacaataggaaatggttgatgtagagaatatgcaagggcaatattgtcatcaaacaagtactgatgatgaagaagagttctt |
312 |
Q |
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| T |
45103736 |
ttaactaactgtcattattacaataggaaatggttgatgtagagaatatgcaagggcaatattgtcatcaaacaagtactgatgatgaagaagagttctt |
45103835 |
T |
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| Q |
313 |
gagagacataattcttcagcaacctgttgcatattctggaagcagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaagcttcat |
412 |
Q |
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| T |
45103836 |
gagagacataattcttcagcaacctgttacatattctggaagcagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaaacttcat |
45103935 |
T |
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| Q |
413 |
ccttcatcatcaccgttcactccaaggacattcattctctcttttgataaatct |
466 |
Q |
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| T |
45103936 |
cttttatcaacaccatccactccaaggacattcattctctcttttgataaatct |
45103989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 232 - 466
Target Start/End: Original strand, 45130384 - 45130615
Alignment:
| Q |
232 |
acaataggaaatggttgatgtagagaatatgcaagggcaatattgtcatcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcag |
331 |
Q |
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| T |
45130384 |
acaataggaattgggtgatgtagaggttttgctagggcaatattgtcatcaaactagtgctgatgatgaagaagagttcttgagagacataatccttcag |
45130483 |
T |
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| Q |
332 |
caacctgttgcatattctggaagcagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaagcttcatccttcatcatcaccgttca |
431 |
Q |
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| T |
45130484 |
caacctgttacatattctgga---agtatatcatcctctaatgagatggatggctcagattgctcaaagaaaaagcttcatccttcatcatcaccgttca |
45130580 |
T |
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| Q |
432 |
ctccaaggacattcattctctcttttgataaatct |
466 |
Q |
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| T |
45130581 |
ctccaaggacattcattctctcttttgataaatct |
45130615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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