View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_18 (Length: 450)
Name: NF1687_high_18
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 12304555 - 12304980
Alignment:
| Q |
18 |
atcatgcaggcttcagtcatggttagatttgctcttttcaattgttttgttctagtaattacatcttttcccgatactacacattaaatgcatgtgaaat |
117 |
Q |
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| T |
12304555 |
atcatgcaggcttcagtcatggttagattttctcttttcaattgttttgttctagtaattacatcttttcccgatactacacattaaatgcatgtgaaat |
12304654 |
T |
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| Q |
118 |
attaatgttgtgtatcttcaataaataggtttcaactgtggagaagcagtgaattttgcacttggtgattggtttcctcttggggctattgcaagcagga |
217 |
Q |
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| T |
12304655 |
attaatgttgtgtatcttcaataaataggtttcaactgtggagaagcagtgaattttgcacttggtgattggtttcctcttggggctattgcaagcagga |
12304754 |
T |
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| Q |
218 |
gatatgcacttcttaacagggtacctttactgccccatgaagaacttctttgcaaagaagcgatgcttattcattcaagcttggagcttgaagattcaga |
317 |
Q |
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| T |
12304755 |
gatatgcacttcttaacagggtacctttactgccccatgaagaacttctttgcaaagaagcgatgcttattcattcaagcttggagcttgaagattcaga |
12304854 |
T |
|
| Q |
318 |
ctttccctcttcagacttgttatctcatcatagaacaaagatatctttcattaatttgttgcgtttccagcattgtgctagttggttactaatgaaatca |
417 |
Q |
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| T |
12304855 |
ctttccctcttcagacttgttatctcatcatagaacaaagatatctttcattaatttgttgcgtttccagcattgtgctagttggttactaatgaaatca |
12304954 |
T |
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| Q |
418 |
agggcgtgtattagtgtttcatctca |
443 |
Q |
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| T |
12304955 |
agggcgtgtattagtgtttcttctca |
12304980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 14156242 - 14156303
Alignment:
| Q |
143 |
taggtttcaactgtggagaagcagtgaattttgcacttggtgattggtttcctcttggggct |
204 |
Q |
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| T |
14156242 |
taggttttaactgtggagaagctgtaaactttgctattggtgattggtttccacttggggct |
14156303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 14140547 - 14140608
Alignment:
| Q |
143 |
taggtttcaactgtggagaagcagtgaattttgcacttggtgattggtttcctcttggggct |
204 |
Q |
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| T |
14140547 |
taggttttaactgtggagaagctgtaaactttgctattggtgattggtttccatttggggct |
14140608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 1037875 - 1037814
Alignment:
| Q |
143 |
taggtttcaactgtggagaagcagtgaattttgcacttggtgattggtttcctcttggggct |
204 |
Q |
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| T |
1037875 |
taggttttaactgtggagaagctgtaaactttgctattggtgattggtttccactcggggct |
1037814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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