View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1687_high_24 (Length: 417)
Name: NF1687_high_24
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 32937769 - 32937393
Alignment:
| Q |
13 |
aatatcacaagttatatcacctttttctccatcagattcccaaatacaaatcttcccaaaatcctttccaccttcaacaaaacaccttttcctcattgtc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32937769 |
aatatcacaagttatatcacctttttctccatcagattcccaaatacaaatcttcccaaaatcctttccaccttcaacaaaacaccttttcctcattgtc |
32937670 |
T |
|
| Q |
113 |
acagcaaaatcatcaccaggataaaaactcccattcaataaagaagattgaaaatcattattactattattattccaattcccaacatagcaacttccat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
32937669 |
acagcaaaatcatcaccaggataaaaactcccattcaataaagaagattgaaaatcattattatta---------caattcccaacatagcaacttccat |
32937579 |
T |
|
| Q |
213 |
caggccaagtaaacacaccttgccctttgggaacaccattctcccattcaccttcgtaacgattcccattcaaccaaacaagcgttcctcttccgttaat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32937578 |
caggccaagtaaacacaccttgccctttgggaacaccattctcccattcaccttcataacgattcccattcaaccaaacaagagttcctcttccgttaat |
32937479 |
T |
|
| Q |
313 |
aacaccgttcttccattcaccaatatactcattcccgtttttccaaacatacctcccttttccttcttgaacattcttcttccacc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32937478 |
aacaccgttcttccattcaccaatatactcattcccgtttttccaaacatacctcccttttccttcttgaacattcttcttccacc |
32937393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 39807601 - 39807649
Alignment:
| Q |
323 |
ttccattcaccaatatactcattcccgtttttccaaacatacctccctt |
371 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
39807601 |
ttccattcaccaacatactcattcccgtttttccacacataccttcctt |
39807649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University