View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_26 (Length: 412)
Name: NF1687_high_26
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 395
Target Start/End: Original strand, 4671011 - 4671391
Alignment:
| Q |
14 |
ttctgttcgtgttcacatggacattgtagagatgctggtttattgtgagcttgatgatcaaagttaatgcatgctccaaaagtgttactaaaattctttt |
113 |
Q |
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| T |
4671011 |
ttctgttcgtgttcacattgacattgtagagatgctgatttattgtgagcttgatgatcaaagttaatgcatgctccaaaagtgttactagaattccttt |
4671110 |
T |
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| Q |
114 |
caggtgtttaacttatgagacttgtcattaataatttaatcaaaaactactcattgagattgttatgctaaaatgataattttttcacaaaaaacttctc |
213 |
Q |
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| T |
4671111 |
caggtgtttaacttatgagacttgtcattaataatttaatcaaaaactactcattgagattgtcatgctaaaatgataattttttcacaaaaaacttctc |
4671210 |
T |
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| Q |
214 |
tcataaccctaacacttcgacctaatgtttaaggcccattttgtttgggtaacaagttatcaacatgactccacaatgttcataatgttcctcattgccc |
313 |
Q |
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| T |
4671211 |
tcataaccctaacacttcgacctaatgtttaaggcccattttgtttgggtaacaagttatcaacatgactccacaatgttcataatgttcctcattgccc |
4671310 |
T |
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| Q |
314 |
ttaagtttcatgcttagttaacatttatagtagaacacgtcccatccagcagaaaaaatatttaaccttaactgctccaatt |
395 |
Q |
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| T |
4671311 |
ttaa-tttcatgcttagttaacatttatagtagaacacttcccatccagcagaaaaaatatttaaccttaactgctccaatt |
4671391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 4670608 - 4670666
Alignment:
| Q |
309 |
tgcccttaagtttcatgcttagttaacatttatagtagaacacgtcccatccagcagaaaaa |
370 |
Q |
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| T |
4670608 |
tgccctcaaatttcatgcttagttaacattta---tagaacacttcccatccagcagaaaaa |
4670666 |
T |
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