View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_29 (Length: 399)
Name: NF1687_high_29
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 214 - 381
Target Start/End: Original strand, 38831803 - 38831962
Alignment:
| Q |
214 |
gagaacttacatgctagctagtagctagggtaggaatgtttttgatttattgcactcaattaaggtttagttttcttgtgaaagagatggaacttttgct |
313 |
Q |
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| T |
38831803 |
gagaacttacatgctagctagtagctagggtaggaatgtttttg--------cactcaattaaggtttagttttcttgtgaaagagatggaacttttgct |
38831894 |
T |
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| Q |
314 |
ctccttaatggactttgaaaatggtaatgttgcctttttaggaagcggcaagggagtgtttggaagaa |
381 |
Q |
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| T |
38831895 |
ctccttaatggactttgaaaatggtaatgttgcctttttaggaagcggcaagggagtgtttggaagaa |
38831962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 38831610 - 38831713
Alignment:
| Q |
20 |
gccactgctagcatgataatcctatttggctagtttcttgattaatttccacacactataaacacaaaaaataatagatcaacaaccttagaatataatt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38831610 |
gccactgctagcatgataatcctatttggctagtttcttgattaatttccacacactataaacacaaaaaataatagatcaacaaccttagaatataatt |
38831709 |
T |
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| Q |
120 |
ctaa |
123 |
Q |
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|||| |
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| T |
38831710 |
ctaa |
38831713 |
T |
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