View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1687_high_3 (Length: 725)
Name: NF1687_high_3
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 598; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 10 - 711
Target Start/End: Complemental strand, 1095312 - 1094604
Alignment:
| Q |
10 |
attattctcccaaatgaaaatatttttatgcaacctccggtc------gcctaaacctccactcacattcaacatatcttccacaaatgcttgtttatta |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1095312 |
attatcctcccaaatgaaaatatttttatgcaacctccggtccatgtagcctaaacctccactcacattcaacatatcttccacaaatgcttgtttatta |
1095213 |
T |
|
| Q |
104 |
attgataaataaactaaaaagattgcttgagtttatccataaaaatttctctgatcacccacaaatcaaaccaaaataatgtatatataccatttccaac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1095212 |
attgataaataaactaaaaagattgcttgagt--atccataaaaatttctctgatcacccacaaatcaaaccaaaataaagtatatataccatttccaac |
1095115 |
T |
|
| Q |
204 |
tacttttggcatgcggttagaaaatcaactaccaggaacaccaccactatctgtactcaacattagtttttccaacaagatgaatctagattacacccta |
303 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1095114 |
tacttttggcatgcggttagaaaaccaactaccaggaacaccaccactatctgtactcaacattagtttttccaccaagatgaatctagattacacccta |
1095015 |
T |
|
| Q |
304 |
taaaaaaccccatccaccccatatttacttgataaaaatttaaaccataaactccattcacacccctcattctcctacatcacttctccaacaaaagcaa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1095014 |
taaaaaaccccatccaccccatatttacttgttaaaaatttaaaccataaactccattcacacccctcattctcctacatcacttctccaacaaaagcaa |
1094915 |
T |
|
| Q |
404 |
tatttacctttggaacctaattaagcaagcaagcatcaattaaaaccgaaattctctacttgagcaagtactcatgaatcatgatactactgatccaatg |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1094914 |
tatttacctttggaacctaattaagcaagcaagcatcaattaaaaccgaaattctctacttgagcaagtactc-------atgatactactgatccaatg |
1094822 |
T |
|
| Q |
504 |
agcaatggttgtgagtataatgacaatcaaataccactattaattgtctcgttaaatctccattacccgaacgttacaaaaagaagaagaaaaaccaaac |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1094821 |
agcaatggttgtgagtataatgacaatcaaataccactattaattgtctcgttaaatctccattacccgaacgttacaaaaagaagaagaaaaaccaaac |
1094722 |
T |
|
| Q |
604 |
attcaatccatcagtctg--------gcatc--atatatatattcaatataagagaattaagagtagtagacagtggaggatggaaatcagttcatcgtg |
693 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1094721 |
attcaatccatcagtctgtgcaacttgcatcatatatatatattcaatataagagaattaagagtagtagacagtggaggatggaaatcagttcatcgtg |
1094622 |
T |
|
| Q |
694 |
ttgtctattaaactatct |
711 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1094621 |
ttgtctattaaactatct |
1094604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 10 - 456
Target Start/End: Complemental strand, 1116749 - 1116295
Alignment:
| Q |
10 |
attattctcccaaatgaaaatatttttatgcaacctccggtcgc------ctaaacctccactcacattcaacatatcttccacaaatgcttgtttatta |
103 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||||| ||| || |||||||||||| |||||| |||||| |||||| | ||||||||| |
|
|
| T |
1116749 |
attatcctcccaaaggaaaatatttttatgcagcctccagtccaagtcatctgaacctccactca--ttcaacttatctttcacaaacacctgtttatta |
1116652 |
T |
|
| Q |
104 |
attgataaataaactaaaaagattgcttgagtttatccataaaaatttctctgatcacccacaaatcaaaccaaaataatgtatatataccatttccaac |
203 |
Q |
| |
|
||||||| ||| ||||||||||||| || |||||||||||||| |||||| | |||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
1116651 |
attgatagatatactaaaaagattggttaagtttatccataaatgtttctccaaccacccacaaatcaaaccaaaataaagtatctataccatttccaac |
1116552 |
T |
|
| Q |
204 |
tacttttggcatgcggttagaaaatcaactaccaggaac---accaccactatctgtactcaacattagtttttccaacaagatgaatctagattacacc |
300 |
Q |
| |
|
||||||| || ||| |||||||| ||| |||||||||| |||||||| |||| |||||||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
1116551 |
cacttttgacaagcgattagaaaaccaaataccaggaacattaccaccaccatctttactcaacgttagttttcccaccaagatgaatctagattacacc |
1116452 |
T |
|
| Q |
301 |
ctataaaaaacccca-tccaccccatatttacttgataaaaatttaaaccataaactccattcacacccctcattctcctacatcacttctccaacaaaa |
399 |
Q |
| |
|
| | |||||||||| | ||| ||||||||||||||| |||||||||||||| ||||| ||||||| | ||||||| || ||| |||||||||||||||| |
|
|
| T |
1116451 |
ttgtgaaaaaccccatttcactccatatttacttgattaaaatttaaaccattaactctattcacatcgctcattcaccaacaccacttctccaacaaaa |
1116352 |
T |
|
| Q |
400 |
gcaatatttacctttggaacctaattaagcaagcaagcatcaattaaaaccgaaatt |
456 |
Q |
| |
|
||||||| |||||||| ||| ||||||| | ||||||||||| ||||||| ||||| |
|
|
| T |
1116351 |
tcaatattcacctttgggacccaattaagaaggcaagcatcaactaaaaccaaaatt |
1116295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 243 - 463
Target Start/End: Complemental strand, 1098087 - 1097869
Alignment:
| Q |
243 |
accaccactatctgtactcaacattagtttttccaac-aagatgaatctagattacaccctataaaaaaccccat---ccaccccatatttacttgataa |
338 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| || ||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||| |
|
|
| T |
1098087 |
accaccaccatctttactcaacattagtttttcccaccaagataaatctagattacaccaagcaaaaaaccccattatccaccccatatttacttcataa |
1097988 |
T |
|
| Q |
339 |
aaatttaaaccataaactccattcacacccctcattctcctacatcacttctccaacaaaagcaatatttacctttggaacctaattaagcaagcaagca |
438 |
Q |
| |
|
||||||||| ||||||| ||||| | || |||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
1097987 |
gtatttaaaccgtaaactctattcata-----tatcctccaacaccacttctccaa-aaaagcaatatttacctttggaacccaattaagcaagcaagta |
1097894 |
T |
|
| Q |
439 |
tcaattaaaaccgaaattctctact |
463 |
Q |
| |
|
| |||| || || ||||| |||||| |
|
|
| T |
1097893 |
taaatttaagccaaaattgtctact |
1097869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 512 - 615
Target Start/End: Complemental strand, 1091076 - 1090976
Alignment:
| Q |
512 |
ttgtgagtataatgacaatcaaataccactattaattgtctcgttaaatctccattacccgaacgttacaaaaagaagaagaaaaaccaaacattcaatc |
611 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||| ||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1091076 |
ttgtgagtataatgacaatcaagtaccactatt---tgtctccttaaatctccattgccagaacgttacagaaagaagaagaaaaaccaaacattcaatc |
1090980 |
T |
|
| Q |
612 |
catc |
615 |
Q |
| |
|
|||| |
|
|
| T |
1090979 |
catc |
1090976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 1098216 - 1098162
Alignment:
| Q |
49 |
gtcgcctaaacctccactcacattcaacatatcttccacaaatgcttgtttattaa |
104 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1098216 |
gtcgcctaaacctcca-tcacattcaacatatcttccacaaatgcctgtttattaa |
1098162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 1121253 - 1121176
Alignment:
| Q |
19 |
ccaaatgaaaatatttttatgcaacctccggtc------gcctaaacctccactcacattcaacatatcttccacaaa |
90 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1121253 |
ccaaaggaaaatatttttatgcatcctccagtccatgtcgcctaaacctccactcacattcaacatatcttccacaaa |
1121176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 8115646 - 8115592
Alignment:
| Q |
55 |
taaacctccactcacattcaacatatcttccacaaatgcttgtttattaattgat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
8115646 |
taaacctccactcacattcaacatatcttccacaaacacctgtttattaattgat |
8115592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University