View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_32 (Length: 374)
Name: NF1687_high_32
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 46796860 - 46796651
Alignment:
| Q |
16 |
atcatccaacctaacaattttgatatttttgtcaattgaaataagatttgtagaccgttccttttatttaaaaggataaatgttatctacatgctccatt |
115 |
Q |
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| T |
46796860 |
atcatccaacctaacaattttgatatttttgtcaattgaaataagatttgtagactgttccttttatttaaaaggataaatgttatctacatgctccatt |
46796761 |
T |
|
| Q |
116 |
aattaagcttctaaaaagataacaaaaatcattagcttttgaccacct-----------gggttacaagtaaaacttttttacaaagacatccaatcaaa |
204 |
Q |
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| T |
46796760 |
aattaagcttctaaaaagataacaaaaatcattagcttttgaccaccttcggtataaaagggttacaagtaaaacttttttacatagacatccaatcaaa |
46796661 |
T |
|
| Q |
205 |
tcatatcata |
214 |
Q |
| |
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|||||||||| |
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| T |
46796660 |
tcatatcata |
46796651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 264 - 357
Target Start/End: Complemental strand, 46796632 - 46796539
Alignment:
| Q |
264 |
gatttgattggatgcatatgtacattatctaaacgaattaattcctaaaacaattggcaactcacaacttgctatgttaataacatgacccata |
357 |
Q |
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| T |
46796632 |
gattggattggatgcatatgcacattatctaaacgaattaattcctaaaacaattggcaactcacaacttgctatgttaataacatgacccata |
46796539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 6689416 - 6689458
Alignment:
| Q |
25 |
cctaacaattttgatatttttgtcaattgaaataagatttgta |
67 |
Q |
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| T |
6689416 |
cctaacaattttgatatttttatcaattgaattaagatttgta |
6689458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 12263099 - 12263047
Alignment:
| Q |
18 |
catccaacctaacaattttgatatttttgtcaattgaaataagatttgtagac |
70 |
Q |
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||||||||||||| |||| ||||||||||||| |||| |||||||||||||| |
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| T |
12263099 |
catccaacctaactatttagatatttttgtcatttgagttaagatttgtagac |
12263047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 18089952 - 18089916
Alignment:
| Q |
18 |
catccaacctaacaattttgatatttttgtcaattga |
54 |
Q |
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| T |
18089952 |
catccgacctaacaattttgatatttttgtcatttga |
18089916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 43839369 - 43839325
Alignment:
| Q |
27 |
taacaattttgatatttttgtcaattgaaataagatttgtagacc |
71 |
Q |
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| T |
43839369 |
taacaattttgacatttttgtcaattgaactaagatttgtggacc |
43839325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 12903676 - 12903625
Alignment:
| Q |
19 |
atccaacctaacaattttgatatttttgtcaattgaaataagatttgtagac |
70 |
Q |
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|||||||||||||||||||||||||||| || ||||| || |||||||||| |
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| T |
12903676 |
atccaacctaacaattttgatatttttgacagttgaattagcatttgtagac |
12903625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 32291863 - 32291819
Alignment:
| Q |
23 |
aacctaacaattttgatatttttgtcaattgaaataagatttgta |
67 |
Q |
| |
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||||||| ||||||||||||||||| |||||| ||||||||||| |
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| T |
32291863 |
aacctaataattttgatatttttgttaattgagttaagatttgta |
32291819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 22491825 - 22491869
Alignment:
| Q |
26 |
ctaacaattttgatatttttgtcaattgaaataagatttgtagac |
70 |
Q |
| |
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||||||||||| |||||| |||||||||| |||||||||||||| |
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| T |
22491825 |
ctaacaattttaatatttatgtcaattgagttaagatttgtagac |
22491869 |
T |
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