View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_39 (Length: 300)
Name: NF1687_high_39
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 4440769 - 4440496
Alignment:
| Q |
10 |
acatcatcatctaatcactagctgattgcacaccgccagtagaatcacctgatatcgttgttacaataccgtcactcaatttgtctatgttagtaggtgc |
109 |
Q |
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| T |
4440769 |
acatcctcatctaatcactagctgattgcacaccgccagtagaaccacctgacatcgtttttacaataccgtcactcaatttgtctatgttagtaggtgc |
4440670 |
T |
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| Q |
110 |
acttataacaggcctgaatttgttgaatttaattagtctaaagaattagataggatgttaattgttcctggcacaatagcattggcaacaagagaagcaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4440669 |
acttataacaggcctgaatttgttgaatttaatttgtctaaagaattagataggatgttaattattcctggcacaatagcattggcaacaagagaagcaa |
4440570 |
T |
|
| Q |
210 |
tagtcctacaaagttccaatagggtggagaaatgcattgctttccaatgttcctcaaatgattctcaaatgaag |
283 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4440569 |
taatcctacaaagttccaatagggtggagaaatgcattgctttccaatgttcctcaaatgattctcaaatgaag |
4440496 |
T |
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