View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_4 (Length: 682)
Name: NF1687_high_4
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 673
Target Start/End: Complemental strand, 20054079 - 20053424
Alignment:
| Q |
18 |
tgcatgagttggaacgttaaaagttatccttaattgagaagatacagaggaattcgaagtcaagaaaggtggttgagttttgatattctcacagttgttt |
117 |
Q |
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| T |
20054079 |
tgcatgagttggaacgttaacagttatccttaattgagaagatatagaagaatttgaagtcaagaaaggtggttgagttttgatattctcacagttgttt |
20053980 |
T |
|
| Q |
118 |
gtgtgattatggtgaggtgtagatgaacctaatatgagattgaataggagtaagaattgaataagatggagtttcttgagtggcttcatgttcatccctt |
217 |
Q |
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| T |
20053979 |
gtgtgattatggtgaggtgtagatgaacctaatatgagattgaataggagtaagaattgaataagatggagtttcttgagtggcttcatgttcatccctt |
20053880 |
T |
|
| Q |
218 |
tctctctagtatcaatgcaaaattctgctcaattatttgaatattctagtgtttttgtttggatgatactggattgtaggtaggaaagcata-------- |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20053879 |
tctctctagtatcaatgcaaaattctgctcaattatttgaatattctagtgtttttgtttggatgatactggattgtagataggaaagcatagtgtatta |
20053780 |
T |
|
| Q |
310 |
gtgtcaagtctaatatttgaaaaaccggacctaaccggccagttgaactaattgaatcaagaatcaattagttcgttcgctggttggtttgatcctgatt |
409 |
Q |
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| T |
20053779 |
gtgtcaagtctaatatttgaaaaatcggacttaaccggccagttgaactaattg-atcaagaatc----agttagttcgcgggttggtttgatcctgatt |
20053685 |
T |
|
| Q |
410 |
acattatattttgattaaatcaggttgaattgcaattggttcaactgattttaannnnnnnaacttctttttatttatcatttggtttagttatggttga |
509 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||| || ||||||| |
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| T |
20053684 |
acattatagtttgattaaatcaggttgaattgcaattgattcaactaatttttatcattttaacttctttttatttatcatttggtttaattgtggttga |
20053585 |
T |
|
| Q |
510 |
actaattgaaccatgatccagatgtctaaccggttggatattctctcgtccaattttttaaaaattggtaaagaggcctggagagacactaaatccaaat |
609 |
Q |
| |
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|||||||||||| ||||| |||||||||| |||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
20053584 |
actaattgaaccgtgatctagatgtctaatcggttgga---tctctggtccaatttttttaaaattggtaaagaggcctagagagacactaaatccaaat |
20053488 |
T |
|
| Q |
610 |
ttctttccatgttggtcccattgctggattaaagactttctttttcctcctttttcatctcact |
673 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20053487 |
ttatttccatgttggtcccattgctggattaaagactttctttttcctcctttttcatgtcact |
20053424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 19250112 - 19250415
Alignment:
| Q |
20 |
catgagttggaacgttaaaagttatccttaattgagaagatacagaggaattcgaagtcaagaaaggtggttgagttttgatattctcacagttgtttgt |
119 |
Q |
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| T |
19250112 |
catgagttggaacgttaacagttatccttatttgagaagatatagaagaatttgaagtcaagaaaggtggttgagttttgatattcccacagttgtttgt |
19250211 |
T |
|
| Q |
120 |
gtgattatggtgaggtgtagatgaacctaatatgagattgaataggagtaagaattgaataagatggagtttcttgagtggcttcatgttcatccctttc |
219 |
Q |
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||||| ||||| ||||||| |||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||| |
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| T |
19250212 |
gtgat---ggtgaagtgtagaagaacctgatatgagattgaataggagtaagaattgaacatgatagagtttcttgagtagcttcatgttcatccctttt |
19250308 |
T |
|
| Q |
220 |
tctctagtatcaatgcaaaattctgctcaattatttgaatattctagtgtttttgtttggatgatactggattgtaggtaggaaagcatagtgtcaagtc |
319 |
Q |
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|||||||||||||||| ||| | ||| |||| |||||||| | |||||||| | | ||||||||||| ||| || ||||||||||||| |||| | |
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| T |
19250309 |
tctctagtatcaatgcgaaactgtgcaaaattgtttgaataatatagtgtttctttctggatgatactagatagt-----ggaaagcatagtgacaaggc |
19250403 |
T |
|
| Q |
320 |
taatatttgaaa |
331 |
Q |
| |
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||||||||||| |
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|
| T |
19250404 |
caatatttgaaa |
19250415 |
T |
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Back To:
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