View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_48 (Length: 270)
Name: NF1687_high_48
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 3575661 - 3575913
Alignment:
| Q |
1 |
aagcacatatttaatattttctttctttttctgaaaaacaagaatatatatattatcatcttgtctaatgtaataagcacatattttataggaagaagga |
100 |
Q |
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| T |
3575661 |
aagcacatatttaatattttctttctttttctgaaaaacaagaatatat-tatcatcttgtcgtctaatgtaataagcacatattttataggaagaagga |
3575759 |
T |
|
| Q |
101 |
tgggttgtgtgtaaagtgttcaagaaacgaatagctacaacaatgaggaaaatggacgattcaccatgttggtatgatgatcaagtatcattcatgcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575760 |
tgggttgtgtgtaaagtgttcaagaaacgaatagctacaacaatgaggaaaatggacgattcaccatgttggtatgatgatcaagtatcattcatgcaat |
3575859 |
T |
|
| Q |
201 |
cagagcttgaatccccaagcagaatttcttctcatcacccttataatgcatcat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575860 |
cagagcttgaatccccaagcagaatttcttctcatcacccttataatgcatcat |
3575913 |
T |
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