View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1687_high_5 (Length: 682)
Name: NF1687_high_5
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Complemental strand, 43017012 - 43016495
Alignment:
| Q |
8 |
gacataaactgaactgttattttgccacgataaataaataggtgttaccacattctcgtttaaaaatctaaaaaagttgcttatagtaatcatttgttga |
107 |
Q |
| |
|
||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
43017012 |
gacatcaactaaacttttattttgccacgataaataaataggtgttaccacattctcttttaaaaatctaaaaaagttgcttatattaatcattttttga |
43016913 |
T |
|
| Q |
108 |
gatattttagtactaataaaactttaataatttgactcgcggttaaactttttgagaaagaaatcagtaattttcaattgtttacataaagactaattga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43016912 |
gatattttagtactaataaaactttaataatttgactcacggttaaactttttgagaaagaaatcagtaattttcaattgtttatttaaagactaattga |
43016813 |
T |
|
| Q |
208 |
aaattattnnnnnnn-cgccaagacaaaattgaaaattactgatttcttcctcaaaaagtataaccgtgagtcaaattattgtgattcataaaaatacta |
306 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43016812 |
aaattattaaaaaaaacgccaagacaaaattgaaaattatcgatttcttcctcaaaaagtttaaccgtgagtcaaattattatgattcataaaaatacta |
43016713 |
T |
|
| Q |
307 |
tagactaannnnnnnncccacgctatagtttttta--gtagcgatgcaatcgcgatttgaattatgtctcaattgtttacataaagaaaattaaagagaa |
404 |
Q |
| |
|
|||||||| ||| |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016712 |
tagactaattttttgcccc-cgctatagttttttttcgcagcgatgcaatcgcgacttgaattatgtctcaattgtttacataaagaaaattaaagagaa |
43016614 |
T |
|
| Q |
405 |
acaactacaagaagaatatttaagaagactaaattggaatggatgatgaataatacatacctgaaaattttcattttgttggagcatgattgttgaaaca |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016613 |
acaactacaagaagaatatttaagaagactaaattggaatggatgatgaataatacatacctgaaaattttcattttgttggagcatgattgttgaaaca |
43016514 |
T |
|
| Q |
505 |
tggtaagaattgtcatcaa |
523 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
43016513 |
tggtaagaattgtcatcaa |
43016495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 585 - 662
Target Start/End: Complemental strand, 43016433 - 43016356
Alignment:
| Q |
585 |
aggcctacttatatggaaagctgcgtttgcactaatctgttggtgcacatgatgatcatgttgctgttgctgttgctg |
662 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016433 |
aggcctacttatatggaaagctgcgtttgcactaatctgttggtgcacatgatgatcatgttgctgttgctgttgctg |
43016356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 43016834 - 43016887
Alignment:
| Q |
234 |
aattgaaaattactgatttcttcctcaaaaagtataaccgtgagtcaaattatt |
287 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
43016834 |
aattgaaaattactgatttctttctcaaaaagtttaaccgtgagtcaaattatt |
43016887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 43016731 - 43016785
Alignment:
| Q |
132 |
taataatttgactcgcggttaaactttttgagaaagaaatcagtaattttcaatt |
186 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
43016731 |
taataatttgactcacggttaaactttttgaggaagaaatcgataattttcaatt |
43016785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University