View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_54 (Length: 256)
Name: NF1687_high_54
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 8818978 - 8819208
Alignment:
| Q |
14 |
atcacatacacaagcatgaaacaatgtgctccactgcaagtgtttccgcctcctggcacactggtggcttcaatatcataaaggtagccggcaatgagac |
113 |
Q |
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| T |
8818978 |
atcacatacacaagcatgaaacaatgtgctccactgcaagtgtttccgcctcctggcacactggtggcttcaatatcataaaggtagccggcaatgagac |
8819077 |
T |
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| Q |
114 |
cagaaaagatgaatgaaccgataggaaggttgagaatgaggatgttgtataataaaccatagtatttgagaccaaatagttctgaagctgctgctggtgt |
213 |
Q |
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| T |
8819078 |
cagaaaagatgaatgaaccgataggaaggttgagaatgaggatgttgtataataaaccatagtatttgagaccaaatagttctgaagctgctgctggtgt |
8819177 |
T |
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| Q |
214 |
tatagtaagacgaactccgtaacatattcct |
244 |
Q |
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| T |
8819178 |
tatagtaagacgaactccgtaacatattcct |
8819208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 8817374 - 8817601
Alignment:
| Q |
14 |
atcacatacacaagcatgaaacaatgtgctccactgcaagtgtttccgcctcctggcacactggtggcttcaatatcataaaggtagccggcaatgagac |
113 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| ||| | | || ||||||||| |||||||||| ||||||||| || || ||||||||| |
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| T |
8817374 |
atcaaatacacaagcatgaaacaatgtgctccgatgcaagaattttcacttcgtggcacactagtggcttcaagatcataaagataaccagcaatgagat |
8817473 |
T |
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| Q |
114 |
cagaaaagatgaatgaaccgataggaaggttgagaatgaggatgttgtataataaaccatagtatttgagaccaaatagttctgaagctgctgctggtgt |
213 |
Q |
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| T |
8817474 |
cagaaaagaggaatgaaccaatagaaaggttgagaatgaggatgttttataatgaaccatgttatttgagtccaaatagttctgaacctgctgattgtgt |
8817573 |
T |
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| Q |
214 |
-tatagtaagacgaactccgtaacatat |
240 |
Q |
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| T |
8817574 |
aaatagtaagacgaactccatagcatat |
8817601 |
T |
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