View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1687_high_64 (Length: 241)
Name: NF1687_high_64
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_64 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 17443657 - 17443876
Alignment:
| Q |
15 |
aaaaacatcaacaatgtaggatcagacttcactttttatgtatgttaccaaaagtctacctcaacattctacaaggtacattaaatcttcagttcatcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17443657 |
aaaaacatcaacaatgtaggatcagacttcactttttatgtatgttacaaaaagtctacctcaccattctaaaaggtacattaaatcttcagttcatcaa |
17443756 |
T |
|
| Q |
115 |
ggttacatcatagcgactcttacaatatctaatccatcaaaattaatacaatagnnnnnnnnnnnnatctaaaactgtgaccttgttgtcaatcgaaagt |
214 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
17443757 |
ggttacatcatagcgactgttacaatatctaatccatcaaaattaatacaatagttttttgtttttatctaaaactgtgaccttcttgtcaatcgaaagt |
17443856 |
T |
|
| Q |
215 |
ccaatcgtggtactgatctg |
234 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17443857 |
ccaatcgtggtactgatctg |
17443876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 5529938 - 5529982
Alignment:
| Q |
107 |
ttcatcaaggttacatcatagcgactcttacaatatctaatccat |
151 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
5529938 |
ttcatcaagataacatcatagcgactgttacaatatctaatccat |
5529982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 9164686 - 9164530
Alignment:
| Q |
15 |
aaaaacatcaacaatgtaggatcagacttcactttttatgtatgttaccaaaagtctacctcaacattctacaaggtacattaaatcttcagttcatcaa |
114 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||| |||||||||||||||||| || || | |||| || ||||||| ||| || ||||||||||||| |
|
|
| T |
9164686 |
aaaaacgtcaacaatgtaggatcaaacttcatttttcatgtatgttaccaaaagtttagctgaccattttaaaaggtacgttacatattcagttcatcaa |
9164587 |
T |
|
| Q |
115 |
ggtta-----------catcatagcgactcttacaatatctaatccatcaaaattaa |
160 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9164586 |
ggttacatctaagttacatcatagcgactgttacaatatctaatccatcaaaattaa |
9164530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 33259391 - 33259236
Alignment:
| Q |
16 |
aaaacatcaacaatgtaggatcagacttcactttttatgtatgttaccaaaagtctacctcaacattctacaaggtacattaaatcttcagttcatcaag |
115 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||| ||||||||| ||||||||||| | | |||| || |||||||||| ||||||| ||||||||| |
|
|
| T |
33259391 |
aaaacgtcaacaatgtaggatcatacttcatttttaatgtatgttcccaaaagtctagccaaccattttaaaaggtacatttcatcttcaattcatcaag |
33259292 |
T |
|
| Q |
116 |
gttac-----------atcatagcgactcttacaatatctaatccatcaaaattaa |
160 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
33259291 |
gttacatctaagctaaatcatagcaactgttacaatatctaatccatcaaaattaa |
33259236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 33384914 - 33384838
Alignment:
| Q |
47 |
tttttatgtatgttaccaaaagtctacctcaacattctacaaggtacattaaatcttcagttcatcaaggttacatc |
123 |
Q |
| |
|
|||||||||||||||||||| ||||| || | |||| || ||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
33384914 |
tttttatgtatgttaccaaatgtctagctgaccattttaaaaggtacattacatcttcaattcatcaaggtttcatc |
33384838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 24633053 - 24633096
Alignment:
| Q |
117 |
ttacatcatagcgactcttacaatatctaatccatcaaaattaa |
160 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
24633053 |
ttacatcatggcgactgttacaatatctaatccattaaaattaa |
24633096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 3511 - 3357
Alignment:
| Q |
16 |
aaaacatcaacaatgtaggatcagacttcactttttatgtatgttaccaaaagtctacctcaacattctacaaggtacattaaatcttcagttcatcaag |
115 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||| ||||||||| ||||||||||| | || |||| || |||||||||| ||||||| ||||||||| |
|
|
| T |
3511 |
aaaacgtcaacaatgtaggatcatacttcatttttaatgtatgttcccaaaagtctagc-caccattttaaaaggtacatttcatcttcaattcatcaag |
3413 |
T |
|
| Q |
116 |
gt-----------tacatcatagcgactcttacaatatctaatccatcaaaattaa |
160 |
Q |
| |
|
|| ||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
3412 |
gttacatctaagctacatcatagcaactgttacaatatctaatccatcaaaattaa |
3357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University