View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_68 (Length: 235)
Name: NF1687_high_68
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_68 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 56528952 - 56529156
Alignment:
| Q |
18 |
attataagatcctgccaaaatcataaaattcatatatattgcataaaataactagttagcaaaccaaaaccacagacatatgaatacaaatcatagagac |
117 |
Q |
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| T |
56528952 |
attataagatcctaccaaaatcataaaattcatatatattgcataaaataactagttagcaaaccaaaaccacagacatatgaatacaaatcatagagac |
56529051 |
T |
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| Q |
118 |
aatgcaaatatcgtggagaaaaatacttattgatcttaaagaaaaagagaaataccttgtttgcggcaccacttccatcaaaaatgccatcttcccaagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56529052 |
aatgcaaatatcgtggagaaaaatacttattgatcttaaagaaaaagagaaataccttgtttgcggcaccacttccatcaaaaatgccatcttcccaagt |
56529151 |
T |
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| Q |
218 |
ataat |
222 |
Q |
| |
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||||| |
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| T |
56529152 |
ataat |
56529156 |
T |
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