View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_74 (Length: 212)
Name: NF1687_high_74
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_74 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 30864580 - 30864404
Alignment:
| Q |
21 |
acctcaataaacataaatccaccaaaaagtctatgctgcttaaagaaagaagagatcgagattttatgcaggactttgtataaatcggcagtttcaacta |
120 |
Q |
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| T |
30864580 |
acctcaataaacacaaatccaccaaaaagtctatgctgcttaaagaaagaagagat-gagattttatgcaggactttgtataaatcggcagtttcaacta |
30864482 |
T |
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| Q |
121 |
tagctctttacttaaccatcattgttgcacaataacgtatatttgatgtgccaataaacttgagtaagatggaaaaat |
198 |
Q |
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| T |
30864481 |
aagctctttacttaaccatcattgttgcacagtaacgtatatttgatgtgccaataaacttgagtaagatggaaaaat |
30864404 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 19822565 - 19822519
Alignment:
| Q |
125 |
tctttacttaaccatcattgttgcacaataacgtatatttgatgtgc |
171 |
Q |
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| T |
19822565 |
tcttaactttaccatcattgttgcacaaaaacatatatttgatgtgc |
19822519 |
T |
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