View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_high_75 (Length: 209)
Name: NF1687_high_75
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_high_75 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 26105504 - 26105688
Alignment:
| Q |
8 |
gtgagatgaaggagatggagaagtttgatgttctttagatgaaaattgttcacgtatgac----accagtccaaaaatggtaatagattttaagaataaa |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
26105504 |
gtgaaatgaaggagatggagaagtttgatgttctttagataaaaattgttcacgtatgacctataccagtccaaaaatggtaataaatttaaagaataaa |
26105603 |
T |
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| Q |
104 |
gataaagcaatggagatttttcgttgattgaggtaaataattaccaccaattcatcaaggcttaacgtagaaaaaacaagttatacat |
191 |
Q |
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| T |
26105604 |
gataaagcaatggagatttttcattgattgagata---aattaccatcaattcatcaaggcttaacgtagaaaaaacaagttatacat |
26105688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 2243330 - 2243370
Alignment:
| Q |
13 |
atgaaggagatggagaagtttgatgttctttagatgaaaat |
53 |
Q |
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| T |
2243330 |
atgaaggatatgaagaagtttgatgttcttgagatgaaaat |
2243370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 32166652 - 32166689
Alignment:
| Q |
16 |
aaggagatggagaagtttgatgttctttagatgaaaat |
53 |
Q |
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| T |
32166652 |
aaggagatgaagaagtttgatgttcttgagatgaaaat |
32166689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 39280978 - 39280914
Alignment:
| Q |
77 |
aaaatggtaatagattttaagaataaagataaagcaatggagatttttcgttgattgaggtaaat |
141 |
Q |
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| T |
39280978 |
aaaatggtaactgattttaagaataaagatgaagaaaaggggatttttctttgataggggtaaat |
39280914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 23577212 - 23577172
Alignment:
| Q |
13 |
atgaaggagatggagaagtttgatgttctttagatgaaaat |
53 |
Q |
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| T |
23577212 |
atgaaggagatggagaagtatgatgtttttgagatgaaaat |
23577172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 32047235 - 32047195
Alignment:
| Q |
13 |
atgaaggagatggagaagtttgatgttctttagatgaaaat |
53 |
Q |
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||||| |||||| ||||||||||||||||| |||||||||| |
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| T |
32047235 |
atgaatgagatgaagaagtttgatgttcttgagatgaaaat |
32047195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 16576309 - 16576269
Alignment:
| Q |
13 |
atgaaggagatggagaagtttgatgttctttagatgaaaat |
53 |
Q |
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|||||||||||| ||||||||||||||||| ||| |||||| |
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| T |
16576309 |
atgaaggagatgaagaagtttgatgttcttgagaggaaaat |
16576269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 52432722 - 52432682
Alignment:
| Q |
13 |
atgaaggagatggagaagtttgatgttctttagatgaaaat |
53 |
Q |
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|||||||||||| |||||||| |||||||| |||||||||| |
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| T |
52432722 |
atgaaggagatgaagaagtttaatgttcttgagatgaaaat |
52432682 |
T |
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