View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_10 (Length: 617)
Name: NF1687_low_10
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Complemental strand, 1572175 - 1571563
Alignment:
| Q |
1 |
aactggtagatgttgttggttgttaccacatcgtttatgttgcaacacttaaaactcattgttaatagtgttaagtataattagaagaggaaagattaca |
100 |
Q |
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| T |
1572175 |
aactggtagatgttgttggttgttaccgcatcgtttatgttgcaacacttaa--ctcattgttaacagtgttaagtataattagaagaggaaagattaca |
1572078 |
T |
|
| Q |
101 |
agcatcagcatcaatatcaattcaatggcagcctctactactttctccaacacattatttctttctccaatttctcatcattctccttcaaacctcaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
1572077 |
agcatcagcatcaatatcaattcaatggcagcctctactactttctccaacacattatttctttctccaatttctcatcattctccttcaaaacccaatt |
1571978 |
T |
|
| Q |
201 |
gtcttccactcatcatcaatttcccaagatcccatttcaaacaaccaccact----------ttttgttcctccgatggcgccgcagctaatgcttctcc |
290 |
Q |
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| T |
1571977 |
gtcttccactcatcatcaatttcccaagatcccatttcaaacaaccaccactaaccaccactttttgttcctccgatggcgccgcagctaatgcttctcc |
1571878 |
T |
|
| Q |
291 |
tcaacaactcactactcccattgaattaagtatgtctctttcattaccacttatttatttatttatttatgccatatgcaacatagacacggacacatgt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1571877 |
tcaacaactcactactcccattgaattaagtatgtctctttcattaccacttatttatttatttatttatgccatatgcagaatagacacggacacatgt |
1571778 |
T |
|
| Q |
391 |
aatttgagaaaaaacatagttgaatgtaattatgtgtcgatgatgtatgacaagcatttaattagaagtgttggtgctacaaagtt--cgagaattgaca |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
1571777 |
aatttgagaaaaaacatagttgaatgtaattatgtgtcgatgatgtctgacaaacatttaattagaagtgttggtgctacaaactttacgagaattgaca |
1571678 |
T |
|
| Q |
489 |
acactagatcgtctagtcgtgctaccgcacggatcatat-cattgaataataataaataacttcaaaattataataaacaaacgcaactaacaataagaa |
587 |
Q |
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||||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1571677 |
acactagatcgtctattcgtgctaccgcactggtcatatacattgaataataataaataacttcaaaattataacaaacaaacgcaactaacaataagaa |
1571578 |
T |
|
| Q |
588 |
tgtcatggtaacaat |
602 |
Q |
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||||||||||||||| |
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| T |
1571577 |
tgtcatggtaacaat |
1571563 |
T |
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