View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1687_low_11 (Length: 594)
Name: NF1687_low_11
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 19 - 577
Target Start/End: Complemental strand, 23128661 - 23128103
Alignment:
| Q |
19 |
ctctgcaaactcgatacaaaagctgaattctacaaagacgtagcactttcttatctttttctcgcaaataacatgcaatacgtcgtcgtaaaggttcgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23128661 |
ctctgcaaactcgatacaaaagctgaattctacaaagacgtagcactttcttatctttttctcgcaaataacatgcaatacgtcgtcgtaaaggttcgaa |
23128562 |
T |
|
| Q |
119 |
gatcgaatctagggtttcttctcggagaagaatggttaacgaatcatgaattgaaggtgaaagagtacgtgaacaaatttgttcaaattggatggaataa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23128561 |
gatcgaatctagggtttcttctcggagaagaatggttaacaaatcatgaattgaaggtgaaagagtatgtgaacaaatttgttcaaattggatggaataa |
23128462 |
T |
|
| Q |
219 |
ggttttgtcaacgttgccggaaaatgaaaattccacggcggagaagacggtggagcaagttaaggctatttttgtaaaattcaatgctgcgtttgatgaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23128461 |
ggttttgtcaacgttgccggaaaatgaaaattccacggcggagaagacggtggagcaagttaaggctatttttgtaaaattcaatgctgcgtttgatgaa |
23128362 |
T |
|
| Q |
319 |
gagtgtaagaaacaaacttcatggattgtatccgacccgaggctaagggatgagattaaagcgttgattggttcgaagttggtggcaaagtatggtggat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23128361 |
gagtgtaagaaacaaacttcatggattgtatccgacccgaggctaagggatgagattaaagcgttgattggttcgaagttggtggcgaagtatggtggat |
23128262 |
T |
|
| Q |
419 |
tctatgagaagaatcgggtcgggtcaggtgtaagatatgaaccggaatatatagagagttatctgggtaatattttgtatggggttgttggtggagattc |
518 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23128261 |
tctatgagaagaatcgggtcgggtccggtgtaagatatgaaccggaatatatagagagttatctgggtaatattttgtatggggttgttggtggagattc |
23128162 |
T |
|
| Q |
519 |
ggggagtgtttcgtcatattcttattcgacgacatcgtcttccgtcagctctattcgcc |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23128161 |
ggggagtgtttcgtcatattcttattcgacgacatcgtcttccgttagctctattcgcc |
23128103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 41102865 - 41102699
Alignment:
| Q |
19 |
ctctgcaaactcgatacaaaagctgaattctacaaagacgtagcactttcttatctttttctcgcaaataacatgcaatacgtcgtcgtaaaggttcgaa |
118 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
41102865 |
ctctgcaaactcgacggtaaagctgagttttacaaagacgttgcactttcgtatctttttctcgcgaataacatgcaatacgtcgtcgtaaaggttcgta |
41102766 |
T |
|
| Q |
119 |
gatcgaatctagggtttcttctcggagaagaatggttaacgaatcatgaattgaaggtgaaagagta |
185 |
Q |
| |
|
|||||||||| ||||| ||||||| || || |||||| ||| || ||| ||||||| |||||||| |
|
|
| T |
41102765 |
aatcgaatctaaggtttattctcggcgaggattggttattgaaacacgaaatgaaggttaaagagta |
41102699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University