View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1687_low_13 (Length: 576)
Name: NF1687_low_13
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_13 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 19 - 576
Target Start/End: Complemental strand, 4441298 - 4440740
Alignment:
| Q |
19 |
gacactaacatatttggttacattcaattgcttacatatttgcaaagtattatcaaggttgacagggcgtgtgtaagtgtttcatagatttaggagatta |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4441298 |
gacactaacatatt-ggttacattcaattgcttacatatttgcaaagtattatcaaggttgacagggcgtgtgtaagtgtttcatagatttaggagatta |
4441200 |
T |
|
| Q |
119 |
attgctccttaaaaatattcagatatttgcgatggatatcaatgaagaagtatccactgaagtcctaacctttgctacgacagaacctctgctctccaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4441199 |
attgctccttaaaaatattcagatatttgcgatggatatcaatgaagaagtatccactgaagtcctaacctttgctacgacagaacctctgctctccaca |
4441100 |
T |
|
| Q |
219 |
tatctacaactacagtttttctctgattcgatggtgttgactatacaaagaaatcacggagtgatttttagcacgctctgatttcatctaaccaagattc |
318 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4441099 |
tatctacaactacagtttttctctgcttcgatggtgttgactatacaaagaaatcacggagtgatttttagcaagctctgatttcatctaaccaagattc |
4441000 |
T |
|
| Q |
319 |
tatgattgattttcaggtagccctatgtc--atgcaccgtgtcagcatttgcttaactagattgggaaatacatcacatatgtttgcaaaattttctaag |
416 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
4440999 |
tatgattgattttcaggtagccctatgtcatatgcaccgtgtcagcatttgcttaactagattggaaaatacatcacatatgtttacaaaattttctaag |
4440900 |
T |
|
| Q |
417 |
cgcacaccaattgaaatttgaacattttgtcgagctatctaaaacacatgagaccttaagctctacagttagcatatacaaaacagtcaaagacacacca |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4440899 |
cgcacaccaattgaaatttgaacattttgtcgagctatctaaaacacatgagaccttaagctctacagttagcatatacaaaaaagtcaaagacacacca |
4440800 |
T |
|
| Q |
517 |
attaggaagaatacgtcatagatagagacaacatcctcatctaatcactagctgattgca |
576 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4440799 |
attaggaagaatgcgtcatagatagagacaacatcctcatctaatcactagctgattgca |
4440740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University