View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1687_low_14 (Length: 566)

Name: NF1687_low_14
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1687_low_14
NF1687_low_14
[»] chr4 (4 HSPs)
chr4 (270-557)||(25743944-25744231)
chr4 (352-557)||(25740326-25740531)
chr4 (1-192)||(25743676-25743866)
chr4 (390-557)||(17383269-17383435)
[»] chr2 (2 HSPs)
chr2 (386-557)||(8534851-8535020)
chr2 (386-445)||(36450074-36450133)
[»] chr1 (2 HSPs)
chr1 (374-454)||(12510035-12510115)
chr1 (375-466)||(12513869-12513960)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 270 - 557
Target Start/End: Original strand, 25743944 - 25744231
Alignment:
Q  270 actaaccagtgtcaaagtttcatcatgttttgttgtgtaagaaactaaaaatgaattaaatctatagtccttctatgacttcactgattatgttaatatg 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  25743944 actaaccagtgtcaaagtttcatcatgttttgttgtgtaagaaactaaaaatgaatgaaaactatagtccttctatgacttcactgattatgttaatatg 25744043  T
Q  370 ttctctgcagatatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttt 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25744044 ttctctgcagatatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttt 25744143  T
Q  470 tgttttctatgtcctcaggtgatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattctactta 557  Q
    ||||||| ||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25744144 tgttttcaatgtaatcaggtgatttaactttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattctactta 25744231  T

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Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 352 - 557
Target Start/End: Original strand, 25740326 - 25740531
Alignment:
Q  352 actgattatgttaatatgttctctgcagatatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacatttt 451  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25740326 actgattatgttaacatgttgtctgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacatttt 25740425  T
Q  452 cttcagcttgccttcttttgttttctatgtcctcaggtgatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattc 551  Q
    ||||||||||||||||||||||||| ||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25740426 cttcagcttgccttcttttgttttcaatgtaatcaggtgatttaactttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattc 25740525  T
Q  552 tactta 557  Q
    ||||||    
T  25740526 tactta 25740531  T

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Target: chr4; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 25743676 - 25743866
Alignment:
Q  1 atctttgtcccaaaaagaagaagttatcactgtnnnnnnnngtaatgtactgaattgacaacggcagtaagagtactgtctttttccggtgtgcaagagt 100  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25743676 atctttgtcccaaaaagaagaagttatcactgtaaaaaaa-gtaatgtactgaattgacaacggcagtaagagtactgtctttttccggtgtgcaagagt 25743774  T
Q  101 atcgaacctatgcccctagcgttgaaaggtagattttcaatctagtgattttaggataactgacttgtcttttattttgtgttgttgtatga 192  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25743775 aacgaacctatgcccctagcgttgaaaggtagattttcaatcaagtgattctaggataactgacttgtcttttattttgtgttgttgtatga 25743866  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 390 - 557
Target Start/End: Original strand, 17383269 - 17383435
Alignment:
Q  390 gttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttctatgtcctcaggt 489  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||| ||| ||    
T  17383269 gttttggatcgcacaaattggaaggtaaacattcttacatcactactcattccatacattatcttcagcttgctttctatagttttctatgtcatcaagt 17383368  T
Q  490 gatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattctactta 557  Q
    ||||| |||||||| | ||||| ||||||||| ||||||||||||||||||  |||||||| ||||||    
T  17383369 gatttgtctttcacac-ttgatattatcaaatatgtaccttcatttttgtcacatattattatactta 17383435  T

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Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 386 - 557
Target Start/End: Original strand, 8534851 - 8535020
Alignment:
Q  386 gttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttctatgtcctc 485  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||| | |||||||||||| ||    
T  8534851 gttggttttggatcgcacaaactggaagacaaac-ttcttacatcactactcattccatacattttcttcagcttgatttctatagttttctatgtcatc 8534949  T
Q  486 aggtgatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattctactta 557  Q
    || |||||| |||||||| | ||||| ||||||||| || |||||||||||||||| |||||||||||||||    
T  8534950 agatgatttgtctttcacac-ttgatattatcaaatatgcaccttcatttttgtctcatattattctactta 8535020  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 36450074 - 36450133
Alignment:
Q  386 gttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccata 445  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36450074 gttggttttggatcgcacatactggaagacaaacattcttacatcactactcattccata 36450133  T

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Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 374 - 454
Target Start/End: Original strand, 12510035 - 12510115
Alignment:
Q  374 ctgcagatatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttctt 454  Q
    |||||| ||||||||| |||||||||| |||||||||||||| |||||| | ||||||||||||||||| |||||||||||    
T  12510035 ctgcagttatttgttgattttggatcgtacaaactggaagaccaacattttcacatcactactcattccctacattttctt 12510115  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 466
Target Start/End: Original strand, 12513869 - 12513960
Alignment:
Q  375 tgcagatatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttc 466  Q
    ||||| ||| |||||  ||||||||| ||||||||| |||| |||| | | |||||||||||| ||||||||||||| |||||| |||||||    
T  12513869 tgcagttatctgttgagtttggatcgtacaaactgggagaccaacactttcacatcactactcgttccatacatttttttcagcctgccttc 12513960  T

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