View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_15 (Length: 546)
Name: NF1687_low_15
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 54416194 - 54416735
Alignment:
| Q |
1 |
catgaaacccacatccatattattttccatccgcactgaaaatcccgtatatcttttctgaaggttcattgaagaatcttctgtctaggggaaggaacct |
100 |
Q |
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| T |
54416194 |
catgaaacccacatccatattattttccatccgcactgaaaatcccgtatatcttttctgaaggttcattgaagaatcttctgtctagaggaaggaacct |
54416293 |
T |
|
| Q |
101 |
ggaacgtgttgaacgaactatcaacagcttagttacacgtttgactgtgaagatgtgctcatacttggcagaaaatggtatattacaagttttagcttga |
200 |
Q |
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| T |
54416294 |
ggaacttgttgaacgaactatcaacagcttagttacacgtttgactgtgaagatgtgctcatacttgtcagaaaatggtatattacaagttttagcttga |
54416393 |
T |
|
| Q |
201 |
tgacaataaataatttttacttgcattgttagcctaatatgtaatataagaccttaaactattgtagaagtgttgtgtttccgacttttattctgaagct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |
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| T |
54416394 |
tgacaataaataatttttacttgcattgttagcctaatatgtaatataagaccttaaactagtgtagaagtgttacgtttccgacgtttattctgaagct |
54416493 |
T |
|
| Q |
301 |
taaccattaaatactattttcatttcttatctactctaattaatggtctttttgttcc-nnnnnnnnatctttacaaaatcgtatcttcgtaggatctca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
54416494 |
taaccattaaatactattttcatttcttatctactctaattaatggtctttttgttcctttttttttatctttacaaaatcgtatcttcgtaggatctca |
54416593 |
T |
|
| Q |
400 |
agacagtggcaccaatgcacagttctgtattcagcatttggtccgtaaacttggaagtgcgccctatattggccaacgggttatactttccgtttgtcaa |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54416594 |
agacagtggcaccaatgcacagttctgtattcagcatttggtccgtaaacttggaagtgcgccctatattggccaacgggttatactttcagtttgtcaa |
54416693 |
T |
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| Q |
500 |
agaattttggtgttagcagaacgtttgcttttctctgctcct |
541 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54416694 |
agaattttggtgttagcagaacgtttgcttttctctgatcct |
54416735 |
T |
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