View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_16 (Length: 503)
Name: NF1687_low_16
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 171 - 374
Target Start/End: Original strand, 49159817 - 49160022
Alignment:
| Q |
171 |
aaatgatatttgtcattcttagggtaaataataaaaatagttaatatgaaacatttttca--aattgtatggttttattctaatgattgcttctatattt |
268 |
Q |
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| T |
49159817 |
aaatggtatttgtcattcttaggctaaataatagaaacagttaatgtgaaacatttttcactaattgtatgattttattctaataattgcttctatattt |
49159916 |
T |
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| Q |
269 |
tctctatatatgtaatgtgtcagaggtcaatgaaaatcatcacaaacatttgtttatttctttgtttgtttatggtatcaatcctaaatagctttacaac |
368 |
Q |
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| T |
49159917 |
tctctatatatgtaacgtgtcaaaggtcaatgaaaatcatcacaaacatttgtgtgtttctttgtttgtttatggtatcaatctcaaatagctttacaac |
49160016 |
T |
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| Q |
369 |
gttgat |
374 |
Q |
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| T |
49160017 |
attgat |
49160022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 49159621 - 49159774
Alignment:
| Q |
18 |
agatgttactatgacattttgatgggtgatatttcccatcatagtattgagaaaaatatcttggatatagtttaatatgtagatgtatctcatttgttac |
117 |
Q |
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| T |
49159621 |
agatgttgctatgacattttgatgggtgatatttcctatcatagtattgagaaaaacatcttggatatagtttagtatgtagatgtatctcatttgttac |
49159720 |
T |
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| Q |
118 |
accaatacaat-cgtgacataatgcggtgtattaagcgtataggattatcatgc |
170 |
Q |
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| T |
49159721 |
accaatacaatccatgacataatgtgctgtattaagcgtgtaggattatcatgc |
49159774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 495
Target Start/End: Original strand, 49160084 - 49160123
Alignment:
| Q |
456 |
ctagacttgttgattgactatagatacgaacattcatctc |
495 |
Q |
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| T |
49160084 |
ctagacttgttgattgactatatatacgaacattcatctc |
49160123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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