View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_18 (Length: 463)
Name: NF1687_low_18
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_18 |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 447
Target Start/End: Complemental strand, 21843959 - 21843525
Alignment:
| Q |
13 |
cagacctaatgaaaagacgaaaagatgcacataatattgttcaaatacacatagtgaccaccatgaacaggacatcatagagccagacaaaaagaaccgg |
112 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21843959 |
cagacccaatgaaaagacgaaaagatgcacataatattgttcaaatacacatagtgaccaccatgaacaggacatcatagagccagacaaaaagaaccgg |
21843860 |
T |
|
| Q |
113 |
ctaaatgcagatagcagaacagcacaacaataaaaatcaaccaaggatttagcaacataaaaaggttaannnnnnnnncaaatacccattattagaaac- |
211 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21843859 |
ctaaatgcagatagcagaacagcataacaataaaaatcaaccaaggatttagcaacataaaaaggttaa-ttttttttcaaatacccattattagaaaca |
21843761 |
T |
|
| Q |
212 |
nnnnnnncctatcagaaatcaacnnnnnnnngtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaataga |
311 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21843760 |
aaaaaaccctatcagaaatcaac-aaaaaaagtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagatctaaataga |
21843662 |
T |
|
| Q |
312 |
tatcttcaaagaatacccaaaaacaagaatcaaaagggaatttct-nnnnnnnnnttatatgaaactaatgaagtccattcaaaggtgaaagaacaccta |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
21843661 |
tatcttcaaagaatacccaaaaacaagaatcaaaagggaatttctaaaaaaaaaattatatgaaattaatgaagtccattcaaaggtgaaacaacaccta |
21843562 |
T |
|
| Q |
411 |
aaattaaaattcaaggaagagatttaccccaattatc |
447 |
Q |
| |
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|||||||||||||||||||||||||||| || ||||| |
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| T |
21843561 |
aaattaaaattcaaggaagagatttacctcagttatc |
21843525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 428
Target Start/End: Original strand, 19893 - 20306
Alignment:
| Q |
13 |
cagacctaatgaaaagacgaaaagatgcacataatattgttcaaatacacatagtgaccaccatgaacaggacatcatagagccagacaaaaagaaccgg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |
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| T |
19893 |
cagacctaatgaaaagacgaaaagatgcacataatattgttcaaatacacatagtgaccaccaagaactggacatcatagagccagacaaaaagaaccag |
19992 |
T |
|
| Q |
113 |
ctaaatgcagatagcagaacagcacaacaataaaaatcaaccaaggatttagcaacataaaaaggttaannnnnnnnncaaatacccattattagaaac- |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
19993 |
ctaaatgcagatagcagaacagcacaacaataaaaatcaaccaaggatttagcaacataacaaggttaa-ttttttttcaaatacccattattagaaaca |
20091 |
T |
|
| Q |
212 |
nnnnnnncctatcagaaatcaacnnnnnnnngtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaataga |
311 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20092 |
aaaaaaccctatcaaaaatcaac-aaaaaaagtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaataga |
20190 |
T |
|
| Q |
312 |
tatcttcaaagaatacccaaaaacaagaatcaaaagggaatttctnnnnnnnnnttatatgaaactaatgaagtccattcaaaggtgaaagaacacctaa |
411 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20191 |
tatcttcaaagaatacccaaaaacaagaatcaaaagggaatttctaaatttttttt-tatgaaactaatgaagtccattcaaaggtgaaacaacacctaa |
20289 |
T |
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| Q |
412 |
aattaaaattcaaggaa |
428 |
Q |
| |
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||||||||||||||||| |
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| T |
20290 |
aattaaaattcaaggaa |
20306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 8e-62; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 243 - 447
Target Start/End: Complemental strand, 10660190 - 10659987
Alignment:
| Q |
243 |
gtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatc |
342 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10660190 |
gtcagtacataaactcaatgtagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaaaaatc |
10660091 |
T |
|
| Q |
343 |
aaaagggaatttctnnnnnnnnnttatatgaaactaatgaagtccattcaaaggtgaaagaacacctaaaattaaaattcaaggaagagatttaccccaa |
442 |
Q |
| |
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||||||||||| || |||||||||||||||||||| ||||||||||||||| |||| | ||| ||||||| || |||||| |||||||||| |
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| T |
10660090 |
aaaagggaattcct-aaaaaaaattatatgaaactaatgaagttcattcaaaggtgaaacaacaacaaaagttaaaatgcagggaagaaatttaccccag |
10659992 |
T |
|
| Q |
443 |
ttatc |
447 |
Q |
| |
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||||| |
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| T |
10659991 |
ttatc |
10659987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 243 - 447
Target Start/End: Complemental strand, 10874335 - 10874132
Alignment:
| Q |
243 |
gtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatc |
342 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10874335 |
gtcagtacataaactcaatgtagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaaaaatc |
10874236 |
T |
|
| Q |
343 |
aaaagggaatttctnnnnnnnnnttatatgaaactaatgaagtccattcaaaggtgaaagaacacctaaaattaaaattcaaggaagagatttaccccaa |
442 |
Q |
| |
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||||||||||| || |||||||||||||||||||| ||||||||||||||| |||| | ||| ||||||| || |||||| |||||||||| |
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| T |
10874235 |
aaaagggaattcct-aaaaaaaattatatgaaactaatgaagttcattcaaaggtgaaacaacaacaaaagttaaaatgcagggaagaaatttaccccag |
10874137 |
T |
|
| Q |
443 |
ttatc |
447 |
Q |
| |
|
||||| |
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|
| T |
10874136 |
ttatc |
10874132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 10660683 - 10660573
Alignment:
| Q |
71 |
caccatgaacaggacatcatagagccagacaaaaagaaccggctaaatgcagatagcagaacagcacaacaataaaaatcaaccaaggatttagcaacat |
170 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| |||||| |
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| T |
10660683 |
caccatgaacataacatcacattgccagacaaaaagaaccggctaaatgcagatagcataatagcacaacaataaaaaccaaccaaggatttaacaacat |
10660584 |
T |
|
| Q |
171 |
aaaaaggttaa |
181 |
Q |
| |
|
||||||||||| |
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|
| T |
10660583 |
aaaaaggttaa |
10660573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 10874828 - 10874718
Alignment:
| Q |
71 |
caccatgaacaggacatcatagagccagacaaaaagaaccggctaaatgcagatagcagaacagcacaacaataaaaatcaaccaaggatttagcaacat |
170 |
Q |
| |
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||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| |||||| |
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| T |
10874828 |
caccatgaacataacatcacattgccagacaaaaagaaccggctaaatgcagatagcataatagcacaacaataaaaaccaaccaaggatttaacaacat |
10874729 |
T |
|
| Q |
171 |
aaaaaggttaa |
181 |
Q |
| |
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||||||||||| |
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|
| T |
10874728 |
aaaaaggttaa |
10874718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 243 - 406
Target Start/End: Original strand, 12818505 - 12818667
Alignment:
| Q |
243 |
gtcactacataaactcaatgaagacccaaataatcaaaac--aacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaa |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| || |||||| ||||||| ||| || ||||||||||||||||||||||| ||||| |
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| T |
12818505 |
gtcactacataaactcaatgaagacccaaacaatcaaaacaaaaaaaaaacgtaatctatgtttaa--agttatcttcaaagaatacccaaaaaaaagaa |
12818602 |
T |
|
| Q |
341 |
tcaaaagggaatttctnnnnnnnnnttatatgaaactaatgaagtccattcaaaggtgaaagaaca |
406 |
Q |
| |
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||||||||||||| || ||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
12818603 |
tcaaaagggaattcctaaaaaattg-tatatgaaactaatgaagttcattcaaaggtgaaacaaca |
12818667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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