View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1687_low_2 (Length: 747)

Name: NF1687_low_2
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1687_low_2
NF1687_low_2
[»] chr4 (6 HSPs)
chr4 (16-731)||(2887689-2888403)
chr4 (73-356)||(2896021-2896304)
chr4 (97-355)||(2878562-2878820)
chr4 (423-729)||(2896357-2896659)
chr4 (420-584)||(2878314-2878478)
chr4 (664-728)||(2878176-2878240)
[»] chr2 (9 HSPs)
chr2 (121-336)||(44232830-44233045)
chr2 (121-338)||(44209809-44210026)
chr2 (121-338)||(44222004-44222221)
chr2 (477-563)||(44222379-44222465)
chr2 (643-729)||(44222534-44222620)
chr2 (664-729)||(44233375-44233440)
chr2 (460-563)||(44210161-44210264)
chr2 (669-727)||(44210359-44210417)
chr2 (477-563)||(44233199-44233285)
[»] chr7 (11 HSPs)
chr7 (193-239)||(39339867-39339913)
chr7 (193-239)||(39354688-39354734)
chr7 (481-537)||(39573967-39574023)
chr7 (193-232)||(39563086-39563125)
chr7 (193-241)||(39573625-39573673)
chr7 (500-554)||(39339556-39339610)
chr7 (500-554)||(39354397-39354451)
chr7 (193-227)||(39367301-39367335)
chr7 (193-239)||(39546293-39546339)
chr7 (500-537)||(39588464-39588501)
chr7 (182-231)||(39620948-39620997)


Alignment Details
Target: chr4 (Bit Score: 692; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 16 - 731
Target Start/End: Complemental strand, 2888403 - 2887689
Alignment:
Q  16 caaaagaggttagaacttgagttggaaagaaaagctgacttaactctaatagtttagttcttatttttcagataatgaaagttcacttactatttccttc 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2888403 caaaagaggttagaactcgagttggaaagaaaagctgacttaactctaatagtttagttcttatttttcagataatgaaagttcacttactatttccttc 2888304  T
Q  116 caagatcccaaaatattgttccaaacatcaagcctatgaaaacagtgaagaaaaacctcacagaagtgtatggcgggttgcgccaatatgaccaatgttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2888303 caagatcccaaaatattgttccaaacatcaagcctatgaaaacagtgaagaaaaacctcacagaagtgtatggcgggttgcgccaatatgaccaatgttg 2888204  T
Q  216 tttccataagcaagccaaacattggactaaaaatgattgtgagtattgggcagagaaataaagatcatttgaaccaggtgcaggtttgcctaattcttct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2888203 tttccataagcaagccaaacattggactaaaaatgattgtgagtattgggcagagaaataaagatcatttgaaccaggtgcaggtttgcctaattcttct 2888104  T
Q  316 ataagttgcttgtttctcctgaacaatagtttataacagtgaggtctttttccaatatgatcatagttggtactataattattaatccatattttcaaat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  2888103 ataagttgcttgtttctcctgaacaatagtttataacagtgaggtctttttccaatatgatcatagttggtacta-aattatgaatccatattttcaaat 2888005  T
Q  416 aaattttcttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctaaagtaagttcttgtgctgaactcgaaacttccaacatccaag 515  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2888004 aaatttgcttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctagagtaagttcttgtgctgaactcgaaacttccaacatccaag 2887905  T
Q  516 ttgctggattatagccatctttgattttactaaccccttcaatgctctaaacaacagaaaatattagaagataatcttccaagtagaattatagctatcc 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2887904 ttgctggattatagccatctttgattttactaaccccttcaatgctctaaacaacagaaaatattagaagataatcttccaagtagaattatagctatcc 2887805  T
Q  616 actataatttatttattttgtctaaaagtaatattaaatataagttgcatccaacctcaaaatacttgatcaattgactagaatgacgacccagcggtcc 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2887804 actataatttatttattttgtctaaaagtaatattaaatataagttgcatccaacctcaaaatacttgatcaattgactagaatgacgacccagcggtcc 2887705  T
Q  716 aacatatatttcttct 731  Q
    ||||||||||||||||    
T  2887704 aacatatatttcttct 2887689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 73 - 356
Target Start/End: Original strand, 2896021 - 2896304
Alignment:
Q  73 ttcttatttttcagataatgaaagttcacttactatttccttccaagatcccaaaatattgttccaaacatcaagcctatgaaaacagtgaagaaaaacc 172  Q
    ||||||||||||| ||||||||  ||||||||||||||||||||||| | ||| || |||||||||||||||||  ||||||||  ||||||||||||||    
T  2896021 ttcttatttttcacataatgaagtttcacttactatttccttccaaggttccagaacattgttccaaacatcaatgctatgaaagtagtgaagaaaaacc 2896120  T
Q  173 tcacagaagtgtatggcgggttgcgccaatatgaccaatgttgtttccataagcaagccaaacattggactaaaaatgattgtgagtattgggcagagaa 272  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||   |||||||||||||||||||||| |||||    
T  2896121 tcacagcagtgtatggcggattgcgccagtatgaccaatgttgtttccataggcaagccaagcattggatccaaaatgattgtgagtattgggcggagaa 2896220  T
Q  273 ataaagatcatttgaaccaggtgcaggtttgcctaattcttctataagttgcttgtttctcctgaacaatagtttataacagtg 356  Q
    || |||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||||    
T  2896221 atgaagatccttagaaccaggagcaggtttgcctaattctactataagttgcttgtttctcctaaagaatagtttatatcagtg 2896304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 97 - 355
Target Start/End: Complemental strand, 2878820 - 2878562
Alignment:
Q  97 ttcacttactatttccttccaagatcccaaaatattgttccaaacatcaagcctatgaaaacagtgaagaaaaacctcacagaagtgtatggcgggttgc 196  Q
    |||||||||||||| | ||| || |||||||| |||||||||||||||||  ||||||||  ||  ||| ||||||| |||| |||||||  ||||||||    
T  2878820 ttcacttactatttgcgtccgaggtcccaaaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtataacgggttgc 2878721  T
Q  197 gccaatatgaccaatgttgtttccataagcaagccaaacattggactaaaaatgattgtgagtattgggcagagaaataaagatcatttgaaccaggtgc 296  Q
    |||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||  || |||||||||||| || |||||| | ||    
T  2878720 gccaatatgaccaacgttgtttccacaagcaagccaagcattgaactaaaaatgattgtgagtattggctagggaaataaagatccttggaaccaagagc 2878621  T
Q  297 aggtttgcctaattcttctataagttgcttgtttctcctgaacaatagtttataacagt 355  Q
    |||||| || |||||||||||||||||||| |||||||||||||||||| |||||||||    
T  2878620 aggttttcccaattcttctataagttgcttatttctcctgaacaatagtgtataacagt 2878562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 423 - 729
Target Start/End: Original strand, 2896357 - 2896659
Alignment:
Q  423 cttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctaaagtaagttcttgtgctgaactcgaaacttccaacatccaagttgctgg 522  Q
    |||||||||||||||||||||||||||||  || |||||||||||  ||||||||| |||||||||||||||| | ||||||||||||||||||||||||    
T  2896357 cttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagttgctgg 2896456  T
Q  523 attatagccatctttgattttactaaccccttcaatgctct-aaacaacagaaaatattagaagataatcttccaagtagaattatagctatccactata 621  Q
    ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| | || | || ||||  |||||||| | |||| ||| ||    
T  2896457 attatagccatctttaattttactaaccccttcgatgctctaaaacaacagaaaatattagcatattagctaccaacaagaattatggttatcaacttta 2896556  T
Q  622 atttatttattttgtctaaaagtaatattaaatataagttgcatccaacctcaaaatacttgatcaattgactagaatgacgacccagcggtccaacata 721  Q
    || |     ||  | ||||||  |||||| |||  |  || |||||||||||||||||||||||||||||| | |||||||||||||  || ||||||||    
T  2896557 atat-----ttcagactaaaaacaatattgaatgcacttttcatccaacctcaaaatacttgatcaattgattggaatgacgacccaatggcccaacata 2896651  T
Q  722 tatttctt 729  Q
    | ||||||    
T  2896652 tgtttctt 2896659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 420 - 584
Target Start/End: Complemental strand, 2878478 - 2878314
Alignment:
Q  420 tttcttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctaaagtaagttcttgtgctgaactcgaaacttccaacatccaagttgc 519  Q
    |||||||||| || | ||||||||||||||||   | ||||||||||   ||||| | || ||||||||||| |||||  ||||| |||||||| |||||    
T  2878478 tttcttacctatatagctcagaatttttgtatatctcatgaaaatcagcacctaatgcaacttcttgtgctggactcgtcacttctaacatccatgttgc 2878379  T
Q  520 tggattatagccatctttgattttactaaccccttcaatgctctaaacaacagaaaatattagaa 584  Q
    ||| ||||| ||||| || |||||||| || |||||||| ||||| |||| ||||||||| ||||    
T  2878378 tgggttatatccatcgtttattttacttactccttcaatactctagacaatagaaaatataagaa 2878314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 664 - 728
Target Start/End: Complemental strand, 2878240 - 2878176
Alignment:
Q  664 atccaacctcaaaatacttgatcaattgactagaatgacgacccagcggtccaacatatatttct 728  Q
    ||||||||||||| ||||||||||||||| |||||| |||||| |  || ||| |||||||||||    
T  2878240 atccaacctcaaagtacttgatcaattgattagaataacgacctaatggcccagcatatatttct 2878176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 121 - 336
Target Start/End: Original strand, 44232830 - 44233045
Alignment:
Q  121 tcccaaaatattgttccaaacatcaagcctatgaaaacagtgaagaaaaacctcacagaagtgtatggcgggttgcgccaatatgaccaatgttgtttcc 220  Q
    ||||| || ||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||| || || ||||||||||||||| |||||||||    
T  44232830 tcccagaacattgttccaaacatcaagcctatgaatgtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttcc 44232929  T
Q  221 ataagcaagccaaacattggactaaaaatgattgtgagtattgggcagagaaataaagatcatttgaaccaggtgcaggtttgcctaattcttctataag 320  Q
    ||||||| |||   |||||||| || || || || ||| |||| | || ||||| |||||| ||||||||||| ||||||  ||  | |||||  |||||    
T  44232930 ataagcaggcctggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcaggtacgctaagttcttgaataag 44233029  T
Q  321 ttgcttgtttctcctg 336  Q
    ||||||||||||||||    
T  44233030 ttgcttgtttctcctg 44233045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 121 - 338
Target Start/End: Original strand, 44209809 - 44210026
Alignment:
Q  121 tcccaaaatattgttccaaacatcaagcctatgaaaacagtgaagaaaaacctcacagaagtgtatggcgggttgcgccaatatgaccaatgttgtttcc 220  Q
    ||||| || |||||||||||||||||| |||||||    ||||||||||||||||||| ||||||||| || || ||||||||||||||| |||||||||    
T  44209809 tcccagaacattgttccaaacatcaaggctatgaatgtcgtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttcc 44209908  T
Q  221 ataagcaagccaaacattggactaaaaatgattgtgagtattgggcagagaaataaagatcatttgaaccaggtgcaggtttgcctaattcttctataag 320  Q
    ||||||| |||   |||||||| || || || || ||| |||| | || ||||| |||||| ||||||||||| |||||   ||| | |||||  |||||    
T  44209909 ataagcaggcctggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcaggcacgccaagttcttgaataag 44210008  T
Q  321 ttgcttgtttctcctgaa 338  Q
    ||||||||||||||||||    
T  44210009 ttgcttgtttctcctgaa 44210026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 121 - 338
Target Start/End: Original strand, 44222004 - 44222221
Alignment:
Q  121 tcccaaaatattgttccaaacatcaagcctatgaaaacagtgaagaaaaacctcacagaagtgtatggcgggttgcgccaatatgaccaatgttgtttcc 220  Q
    ||||| || ||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||| || || ||||||||||||||| |||||||||    
T  44222004 tcccagaacattgttccaaacatcaagcctatgaaggtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtttcc 44222103  T
Q  221 ataagcaagccaaacattggactaaaaatgattgtgagtattgggcagagaaataaagatcatttgaaccaggtgcaggtttgcctaattcttctataag 320  Q
    ||||||| |||   ||||| || || || || || ||| |||| | || ||||| |||||| ||||||||||| |||||   ||  | |||||  |||||    
T  44222104 ataagcaggcctggcattgaaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggagcaggcacgctaagttcttgaataag 44222203  T
Q  321 ttgcttgtttctcctgaa 338  Q
    ||||||||||||||||||    
T  44222204 ttgcttgtttctcctgaa 44222221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 477 - 563
Target Start/End: Original strand, 44222379 - 44222465
Alignment:
Q  477 taagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatgctct 563  Q
    ||||||||||||||| | | | ||||||||||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||    
T  44222379 taagttcttgtgctgtagttgtaacttccaacatccatgttgctgggttatatccatctttgattttactaactccgtcaatgctct 44222465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 643 - 729
Target Start/End: Original strand, 44222534 - 44222620
Alignment:
Q  643 gtaatattaaatataagttgcatccaacctcaaaatacttgatcaattgactagaatgacgacccagcggtccaacatatatttctt 729  Q
    |||||||||||   |||| | |||| ||||| |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||    
T  44222534 gtaatattaaactaaagtaggatcctacctcgaaatacttgatcaaatgagtagaatgacgacccagtggtccaacatatatttctt 44222620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 664 - 729
Target Start/End: Original strand, 44233375 - 44233440
Alignment:
Q  664 atccaacctcaaaatacttgatcaattgactagaatgacgacccagcggtccaacatatatttctt 729  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||  |||||||||||||||||||    
T  44233375 atcctacctcaaaatacttgatcaaatgagtagaatgacgacccaatggtccaacatatatttctt 44233440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 460 - 563
Target Start/End: Original strand, 44210161 - 44210264
Alignment:
Q  460 aaaatcaattcctaaagtaagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatg 559  Q
    ||||||||  || ||| ||||||||||||| | | | | ||||||||||||||| |||||||| ||||| || |||||||||||||| || || ||||||    
T  44210161 aaaatcaacacccaaattaagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttgattttactcactccgtcaatg 44210260  T
Q  560 ctct 563  Q
    ||||    
T  44210261 ctct 44210264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 669 - 727
Target Start/End: Original strand, 44210359 - 44210417
Alignment:
Q  669 acctcaaaatacttgatcaattgactagaatgacgacccagcggtccaacatatatttc 727  Q
    ||||| |||||||||||||| ||| |||||||||||||||  |||||||||||||||||    
T  44210359 acctcgaaatacttgatcaaatgagtagaatgacgacccaatggtccaacatatatttc 44210417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 563
Target Start/End: Original strand, 44233199 - 44233285
Alignment:
Q  477 taagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatgctct 563  Q
    ||||||||||||| | | | | ||||||||||||||| |||||||| ||||| || |||||||||||||| || || ||||||||||    
T  44233199 taagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttgattttactcactccgtcaatgctct 44233285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 39339913 - 39339867
Alignment:
Q  193 ttgcgccaatatgaccaatgttgtttccataagcaagccaaacattg 239  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||    
T  39339913 ttgcgccaataagaccaatgttgtttccataagcaagccatacattg 39339867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 39354734 - 39354688
Alignment:
Q  193 ttgcgccaatatgaccaatgttgtttccataagcaagccaaacattg 239  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||    
T  39354734 ttgcgccaataagaccaatgttgtttccataagcaagccatacattg 39354688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 481 - 537
Target Start/End: Original strand, 39573967 - 39574023
Alignment:
Q  481 ttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatcttt 537  Q
    ||||| |||||| || | ||||||||||||||||||||||||||| |||||||||||    
T  39573967 ttcttttgctgagctagtaacttccaacatccaagttgctggattgtagccatcttt 39574023  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 39563086 - 39563125
Alignment:
Q  193 ttgcgccaatatgaccaatgttgtttccataagcaagcca 232  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  39563086 ttgcgccaataagaccaatgttgtttccataagcaagcca 39563125  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 39573625 - 39573673
Alignment:
Q  193 ttgcgccaatatgaccaatgttgtttccataagcaagccaaacattgga 241  Q
    |||||||| || |||||||||||||||||||| ||||||| ||||||||    
T  39573625 ttgcgccagtaagaccaatgttgtttccataaacaagccatacattgga 39573673  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 500 - 554
Target Start/End: Complemental strand, 39339610 - 39339556
Alignment:
Q  500 acttccaacatccaagttgctggattatagccatctttgattttactaacccctt 554  Q
    |||||||||||||| |||||||||||||| || |||||||| || ||||| ||||    
T  39339610 acttccaacatccatgttgctggattataaccgtctttgatcttgctaacacctt 39339556  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 500 - 554
Target Start/End: Complemental strand, 39354451 - 39354397
Alignment:
Q  500 acttccaacatccaagttgctggattatagccatctttgattttactaacccctt 554  Q
    |||||||||||||| |||||||||||||| || |||||||| || ||||| ||||    
T  39354451 acttccaacatccatgttgctggattataaccgtctttgatctttctaacacctt 39354397  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 39367335 - 39367301
Alignment:
Q  193 ttgcgccaatatgaccaatgttgtttccataagca 227  Q
    ||||||||||| |||||||||||||||||||||||    
T  39367335 ttgcgccaataagaccaatgttgtttccataagca 39367301  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 39546293 - 39546339
Alignment:
Q  193 ttgcgccaatatgaccaatgttgtttccataagcaagccaaacattg 239  Q
    |||||||| || |||||||||||||||||||| ||||||| ||||||    
T  39546293 ttgcgccagtaagaccaatgttgtttccataaacaagccatacattg 39546339  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 537
Target Start/End: Original strand, 39588464 - 39588501
Alignment:
Q  500 acttccaacatccaagttgctggattatagccatcttt 537  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  39588464 acttccaaaatccaagttgctggattatatccatcttt 39588501  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 39620948 - 39620997
Alignment:
Q  182 tgtatggcgggttgcgccaatatgaccaatgttgtttccataagcaagcc 231  Q
    ||||| |||| || ||||| || |||||||||||||||||||||||||||    
T  39620948 tgtatcgcggattccgccagtaagaccaatgttgtttccataagcaagcc 39620997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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