View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_20 (Length: 450)
Name: NF1687_low_20
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 47201021 - 47200612
Alignment:
| Q |
15 |
tcaattaatacaaaattaacatcctaaaatagtaattacgacataaacaaactttgaagttctttgaaattctaacgtacctcttttaagtactttgcgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47201021 |
tcaattaatacaaaattaacatcctaaaatagtaattaagacataaacaaactttgaagttct----------aacgtacctcttttaagtactttgcgt |
47200932 |
T |
|
| Q |
115 |
aattaccaagaaaaagcggatttccaggatttgcttcaatcattgtacggtaatacaaatcggtgctatcatttccatgatttgaatcaccgaatcttga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47200931 |
aattaccaagaaaaagcggatttccaggatttgcttcaatcattgtacggtaatacaaatcggtgctatcatttccatgatttgaatcaccgaatcttga |
47200832 |
T |
|
| Q |
215 |
aactccaccgtcatttttgtcaaatccaccaccacctccttcttcaaccaaaacaagcatcgaaccaccgtctctggcatcgacttcactctggctttct |
314 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47200831 |
aactccaccgtcgtttttgtcaaatccaccaccacctccttcttcaaccaaaacaagcatcgaaccaccgtctctggcatcgacttcactctggctttct |
47200732 |
T |
|
| Q |
315 |
tccaactcggttaaagaacaaagcgcggaactaaatgacgccgttcttgaacgagcaccgaaagttccggttctgctctcttcttcatcttcatcgaatt |
414 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47200731 |
tcgaactcggttaaagaacaaagcgcggaactaaacgacgccgttcttgaacgagcaccgaaagttccggttctgctctcttcttcatcttcatcgaatt |
47200632 |
T |
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| Q |
415 |
gacgacggtggagaggcttc |
434 |
Q |
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| T |
47200631 |
gacgacggtggagaggcttc |
47200612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 306 - 434
Target Start/End: Complemental strand, 20426289 - 20426162
Alignment:
| Q |
306 |
tggctttcttccaactcggttaaagaacaaagcgcggaactaaatgacgccgttcttgaacgagcaccgaaagttccggttctgctctcttcttcatctt |
405 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20426289 |
tggctttcttccaactctgttaaagaacaaagcgcggaaccaaacgacgccgttctggaacgagcaccgaaagttccggttccgctctcttcttcatctt |
20426190 |
T |
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| Q |
406 |
catcgaattgacgacggtggagaggcttc |
434 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
20426189 |
catcgaattgac-acggtggagaggcttc |
20426162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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