View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_22 (Length: 427)
Name: NF1687_low_22
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 41170896 - 41171294
Alignment:
| Q |
9 |
gataatactatgctttgtgcataactttttgatagtgctccaggtccgatggttttagtggtaactttttgggatattatttctacgtatgttaagctgc |
108 |
Q |
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| T |
41170896 |
gataatactatgctttgtgcataactttttgatagtgctccaggtccgatggttttagtggtaactttttgggatattatttctacgtatgttaagctgc |
41170995 |
T |
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| Q |
109 |
tgaataacatcaattccaacatgttggtgttaatccctgaaaagccaggatatatgatgctttgcaagattttcgtccctttaggttggctgctatttgc |
208 |
Q |
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| T |
41170996 |
tgaataacatcaattccaacatgttggtgttaatccctgaaaagccaggatat--gatgctttgcaagattttcgtccctttaggttggctgctatttgc |
41171093 |
T |
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| Q |
209 |
tcctaaggtttcgttccaaggaaggaaaatttctgactgtattaatgttcttcatagaaaattttgattttgatcatcataaaaactatgattatgcttc |
308 |
Q |
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| T |
41171094 |
tcctaaggtttcgttccaaggaaggaaaatttctgactgtattaatgttcttcatagaaaattttgattttgatcatcataaaaactatgattatgcttc |
41171193 |
T |
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| Q |
309 |
aagtaaacagagcaatattcattcacttaaaattatccaaacgactttgcaacatggtcacactcacaccaggtttgacccatggcaatgcaagttcagc |
408 |
Q |
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| T |
41171194 |
aagtaaacagagcaatattcattcacttaaaattatccaaacgactttgcaacatggtcacactcacaccaggtttgacccatggcaatgcaagttcagc |
41171293 |
T |
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