View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_24 (Length: 422)
Name: NF1687_low_24
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 23118673 - 23118276
Alignment:
| Q |
9 |
ccaatgagatcttttaggactcttcagtctacttgtccatatatcttttctgatggtgttccacgtcttcctcaatccatccctacggatgagataccac |
108 |
Q |
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| T |
23118673 |
ccaatgagatcttttaggactcttcagtctacttgttcatatatcttttctgatggtgttccacgtcttcctcaatccatccctacggatgagataccac |
23118574 |
T |
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| Q |
109 |
caaaacgttctaaaattgagaagaacacgagcaagactcgggatgacatccgtaagctgtgtgaaaatcaaattgccatcatgaaccatctggcctacaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23118573 |
caaaacgttctaaaattgagaagaacacgagcaagactcgggatgacatccgtaagctgtgtgaaaatcaaattgccatcatgaaccatctggcctacaa |
23118474 |
T |
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| Q |
209 |
tactcttgaattacaaattcagaggaactggcaagcaagcgcgcttaacatccttctcaacatgcctcctctggccgcaaatcctctccagccttcggtt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23118473 |
tactcttgaattacaaattcagaggaactggcaagcaagcgcgcttaacatccttctcaacatgcctcctctggccgcaaatcctctccagccttcggtt |
23118374 |
T |
|
| Q |
309 |
tttaacatgaatccgcctgatgtctcatcttcttctgatgcttcctctccaactgcaccctctatgtaggctccctctcctttttgcgatgacaaaga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23118373 |
tttaacatgaatccgcctgatgtctcatcttcttctgatgcttcctctccaactgcaccctctatgtaggctccctctcctttttgcgatgacaaaga |
23118276 |
T |
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