View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1687_low_25 (Length: 419)

Name: NF1687_low_25
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1687_low_25
NF1687_low_25
[»] chr2 (23 HSPs)
chr2 (1-403)||(32127219-32127621)
chr2 (1-110)||(42439966-42440075)
chr2 (1-110)||(35962695-35962804)
chr2 (1-110)||(41251712-41251821)
chr2 (1-115)||(6403882-6403996)
chr2 (1-110)||(2958179-2958287)
chr2 (1-111)||(16405579-16405689)
chr2 (1-110)||(17445119-17445226)
chr2 (1-110)||(18981597-18981705)
chr2 (1-90)||(44084681-44084770)
chr2 (1-106)||(31581700-31581805)
chr2 (1-90)||(45418583-45418672)
chr2 (1-84)||(771005-771088)
chr2 (1-90)||(8147351-8147440)
chr2 (352-403)||(32147838-32147889)
chr2 (15-81)||(7072644-7072710)
chr2 (1-66)||(4555289-4555354)
chr2 (1-88)||(8059411-8059498)
chr2 (1-90)||(26237957-26238045)
chr2 (15-66)||(34905973-34906024)
chr2 (1-58)||(26162777-26162834)
chr2 (1-65)||(12756915-12756979)
chr2 (60-116)||(34523214-34523270)
[»] chr4 (31 HSPs)
chr4 (1-110)||(25930688-25930797)
chr4 (1-110)||(20129290-20129399)
chr4 (6-106)||(36382428-36382528)
chr4 (1-113)||(13012165-13012277)
chr4 (1-107)||(17511312-17511417)
chr4 (1-110)||(26439357-26439466)
chr4 (1-110)||(29319783-29319892)
chr4 (1-110)||(34407362-34407471)
chr4 (1-107)||(40528996-40529104)
chr4 (1-110)||(47500753-47500862)
chr4 (1-90)||(30216820-30216909)
chr4 (1-113)||(43143662-43143774)
chr4 (1-110)||(43355884-43355993)
chr4 (1-90)||(6690313-6690402)
chr4 (5-88)||(45194178-45194261)
chr4 (1-87)||(3292974-3293060)
chr4 (259-328)||(5521131-5521199)
chr4 (1-89)||(42333854-42333942)
chr4 (5-115)||(27363336-27363446)
chr4 (1-90)||(10352962-10353051)
chr4 (1-78)||(48129978-48130055)
chr4 (1-90)||(50205155-50205244)
chr4 (1-89)||(30077709-30077797)
chr4 (1-88)||(30109958-30110045)
chr4 (5-90)||(26448053-26448138)
chr4 (1-84)||(29996061-29996144)
chr4 (1-88)||(48989330-48989417)
chr4 (49-112)||(7769306-7769369)
chr4 (46-107)||(6235515-6235576)
chr4 (1-58)||(44156683-44156740)
chr4 (53-90)||(49908782-49908819)
[»] chr7 (13 HSPs)
chr7 (1-110)||(5555467-5555576)
chr7 (1-111)||(3114174-3114284)
chr7 (1-110)||(14777185-14777294)
chr7 (1-106)||(8394109-8394214)
chr7 (1-106)||(36630800-36630905)
chr7 (1-90)||(34389134-34389223)
chr7 (1-90)||(33685564-33685653)
chr7 (1-81)||(35090177-35090257)
chr7 (1-90)||(8867809-8867898)
chr7 (1-71)||(40920081-40920151)
chr7 (1-90)||(37002222-37002311)
chr7 (1-83)||(43184546-43184628)
chr7 (1-86)||(26624749-26624835)
[»] chr5 (20 HSPs)
chr5 (1-107)||(13817960-13818066)
chr5 (1-107)||(10033910-10034016)
chr5 (1-111)||(36293699-36293809)
chr5 (1-110)||(39434676-39434785)
chr5 (1-106)||(1776454-1776559)
chr5 (1-110)||(3155709-3155818)
chr5 (1-111)||(39657584-39657694)
chr5 (1-110)||(26283396-26283505)
chr5 (1-88)||(36291373-36291460)
chr5 (1-90)||(12278938-12279027)
chr5 (1-90)||(17332629-17332718)
chr5 (1-90)||(31501794-31501883)
chr5 (1-90)||(31680367-31680456)
chr5 (1-72)||(16155015-16155086)
chr5 (1-95)||(19985934-19986028)
chr5 (1-90)||(37254641-37254730)
chr5 (1-71)||(43068896-43068966)
chr5 (1-58)||(16333954-16334011)
chr5 (1-76)||(33430335-33430410)
chr5 (54-107)||(14316641-14316694)
[»] chr6 (10 HSPs)
chr6 (1-110)||(34948836-34948945)
chr6 (1-110)||(398597-398706)
chr6 (1-110)||(13837801-13837910)
chr6 (1-90)||(18339106-18339195)
chr6 (4-90)||(31028445-31028531)
chr6 (1-84)||(29743289-29743372)
chr6 (1-90)||(28996730-28996819)
chr6 (5-90)||(24697899-24697984)
chr6 (1-74)||(33229414-33229487)
chr6 (54-90)||(13647017-13647053)
[»] chr3 (17 HSPs)
chr3 (1-110)||(22968522-22968631)
chr3 (1-106)||(34084200-34084305)
chr3 (1-110)||(6269504-6269613)
chr3 (1-110)||(39771770-39771879)
chr3 (1-91)||(27935177-27935267)
chr3 (1-110)||(19390126-19390235)
chr3 (1-112)||(11018290-11018401)
chr3 (1-107)||(40081818-40081922)
chr3 (1-90)||(45182981-45183070)
chr3 (1-110)||(6503647-6503756)
chr3 (1-90)||(6930972-6931061)
chr3 (1-90)||(33040953-33041042)
chr3 (1-90)||(45335875-45335963)
chr3 (38-106)||(22922141-22922209)
chr3 (1-90)||(19565579-19565668)
chr3 (1-66)||(5135293-5135358)
chr3 (42-90)||(5354709-5354757)
[»] chr1 (11 HSPs)
chr1 (1-110)||(7433425-7433534)
chr1 (1-110)||(26144235-26144344)
chr1 (1-107)||(42311019-42311125)
chr1 (1-103)||(32982134-32982236)
chr1 (1-110)||(23313218-23313328)
chr1 (1-86)||(3828988-3829073)
chr1 (1-90)||(35907552-35907641)
chr1 (1-89)||(41972353-41972440)
chr1 (1-90)||(17445313-17445402)
chr1 (1-82)||(321455-321536)
chr1 (159-219)||(29580258-29580317)
[»] chr8 (12 HSPs)
chr8 (1-107)||(29728464-29728570)
chr8 (1-113)||(3648872-3648984)
chr8 (6-106)||(15838270-15838370)
chr8 (5-110)||(39914495-39914600)
chr8 (1-86)||(16788103-16788188)
chr8 (1-91)||(34136903-34136993)
chr8 (1-90)||(4404008-4404097)
chr8 (1-90)||(36408551-36408640)
chr8 (1-90)||(23402108-23402197)
chr8 (1-90)||(2729274-2729363)
chr8 (1-74)||(3435285-3435358)
chr8 (1-58)||(9877252-9877309)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-112)||(17820-17931)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-110)||(480535-480644)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-113)||(499-611)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-90)||(5230-5319)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-90)||(31480-31569)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-71)||(52944-53014)


Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 32127219 - 32127621
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32127219 tttctttttgtaaatgtgttaatgagcttttgggtcgagtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgccatacgctaga 32127318  T
Q  101 accgcccatggttatgtgcaaatatttataaccatttcaatgtaacttttatgcatgcatgccttttaacttcaactattatttagtactagatctcaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32127319 accgcccatggttatgtgcaaatatttataaccatttcaatgtaacttttatgcatgcatgccttttaacttcaactattatttagtactagatctcaca 32127418  T
Q  201 ccacgacaaaacgtcacacgcacggcccgtgctgtaccacgggttatcgagtagtttcccctttgaaaggctaaaactaaggtacaaaaaatcatttgaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32127419 ccacgacaaaacgtcacacgcacggcccgtgctgtaccacgggttatcgactagtttcccctttgaaaggctaaaactaaggtacaaaaaatcatttgaa 32127518  T
Q  301 ttttccatgaaaatcataacaaggaagtttgcttatatcctcgtagttaattagacgatcatatcatagaattagatctattattcattatgatatagaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32127519 ttttccatgaaaatcataacaaggaagtttgcttatatcctcgtagttaattagacgatcatatcatagaattagatctattattcattatgatatagaa 32127618  T
Q  401 aat 403  Q
    |||    
T  32127619 aat 32127621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 42440075 - 42439966
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  42440075 tttctttttgtaaatgtgttaatgggcttttgggtttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtaga 42439976  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  42439975 accgcccatg 42439966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 35962804 - 35962695
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||||||||||||||||| |||||||||||  ||| ||||||||||||||||| ||||||| |||| |||||||| |||||||||||||| ||||    
T  35962804 tttctttttgtaaatgtgttaataagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtaga 35962705  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  35962704 accgcccatg 35962695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41251712 - 41251821
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| ||||||| |||||||||||||||||||| | | ||| ||||    
T  41251712 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcactacacggtaga 41251811  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  41251812 accgcccatg 41251821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 6403882 - 6403996
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| ||||||||||||||| ||||| |||  ||| ||||||||||||||||| ||||||| |||||||||||||||||||||| | ||| | ||    
T  6403882 tttctttttataaatgtgttaatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 6403981  T
Q  101 accgcccatggttat 115  Q
    |||||||||||||||    
T  6403982 accgcccatggttat 6403996  T

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Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 2958179 - 2958287
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||| |||||||||||||||||| ||||||||||  ||| |||||||||||| |||| ||||||| |||| ||||||||||||||||||||||| ||||    
T  2958179 tttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaa-ttatcgatcgagcccggacgaccgcccggggtcgccatacggtaga 2958277  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  2958278 accgcccatg 2958287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 16405689 - 16405579
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| |||||||||||||||||||||||||  ||| ||| ||||||||||||| ||| ||| |||||||||||||| ||||| ||||| | ||||    
T  16405689 tttctttttataaatgtgttaatgagcttttgggttgagtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtcaccatatggtaga 16405590  T
Q  101 accgcccatgg 111  Q
    |||||||||||    
T  16405589 accgcccatgg 16405579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 17445119 - 17445226
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||  ||||||||||||| |||||||  |||||||||||||| |||||||| ||| ||||    
T  17445119 tttctttttgtaaatgtgttaatgggcttttgggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtaga 17445216  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  17445217 accgcccatg 17445226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 18981705 - 18981597
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||||||||||| ||||||  |||||||||  ||| |||||||||||||||||  |||||| |||| ||||||||| ||||||||||||| ||||    
T  18981705 tttctttttgtaaatgttttaatggacttttgggttgagtctaatgtgcaaaaattatcaatcgagcccggacgaccgccc-gggtcgccatacggtaga 18981607  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  18981606 accgcccatg 18981597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 44084681 - 44084770
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| ||||||||||| ||||||| |   |||||||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  44084681 tttctttttgtaagtgtgttaatgaacttttggattgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcc 44084770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 31581700 - 31581805
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| |||||||||   ||| |||| |||||||| ||| | ||||| | ||||||||||||| |||||||||||  ||||    
T  31581700 tttctttttgtaaatgtgttaatgggcttttgggatgagtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgccatacagtaga 31581799  T
Q  101 accgcc 106  Q
    ||||||    
T  31581800 accgcc 31581805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45418672 - 45418583
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||  ||||||||||    | ||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  45418672 tttctttttgtaagtgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 45418583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 771088 - 771005
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggg 84  Q
    ||||||||||||| |||||||||| |||||| |||   || |||||||||||| |||| ||||||| |||||||||||||||||    
T  771088 tttctttttgtaagtgtgttaatgggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccggg 771005  T

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Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8147440 - 8147351
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||   |||||| ||   || ||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  8147440 tttctttttgtaagtgtgttaattgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgcc 8147351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 32147838 - 32147889
Alignment:
Q  352 tagacgatcatatcatagaattagatctattattcattatgatatagaaaat 403  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||||||||    
T  32147838 tagacgatgatatcatagaattagatccattgttcattatgatatagaaaat 32147889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 7072644 - 7072710
Alignment:
Q  15 tgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgccc 81  Q
    |||||||||| ||||||||||  ||||||||||  ||||||||| ||||||| ||||||||||||||    
T  7072644 tgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatcgatcgagcccgggcgaccgccc 7072710  T

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Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4555289 - 4555354
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgag 66  Q
    ||||||||||||| |||||||| ||||||||||||   |||| ||||||||||||||| |||||||    
T  4555289 tttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcgatcgag 4555354  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8059411 - 8059498
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcg 88  Q
    ||||||||||||| |||||||||  ||||||||||  | | ||||||||||||||||| ||| ||| | |||||| || |||||||||    
T  8059411 tttctttttgtaagtgtgttaattggcttttgggttgactctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcg 8059498  T

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Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26238045 - 26237957
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| ||||||||||  ||||||| |    | |||| ||||||||| || ||||||| |||||||||||||||||||||||    
T  26238045 tttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaat-atcgatcgagcccgggcgaccgcccggggtcgcc 26237957  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 34906024 - 34905973
Alignment:
Q  15 tgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgag 66  Q
    |||||||||| |||||||||| | | |||||||||||||||||| |||||||    
T  34906024 tgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgag 34905973  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26162777 - 26162834
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattat 58  Q
    ||||||||||||| |||||||||| | ||||||||  | ||||||||| |||||||||    
T  26162777 tttctttttgtaagtgtgttaatgggtttttgggttgaatttaatgtgtaaaaattat 26162834  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12756915 - 12756979
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcga 65  Q
    ||||||||||||| |||||||||  ||||||||||   || ||||| ||||||||||| ||||||    
T  12756915 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcga 12756979  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 34523270 - 34523214
Alignment:
Q  60 gatcgagaccgggcgaccgcccggggtcgccatacgctagaaccgcccatggttatg 116  Q
    ||||||| |||||||||||||||||||||||   || || |||||||| ||||||||    
T  34523270 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccctggttatg 34523214  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25930797 - 25930688
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||    
T  25930797 tttctttttgtaaatgtgttaatgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtaga 25930698  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  25930697 accgcccatg 25930688  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 20129399 - 20129290
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| ||||||| |||||||||||||||||||||| | ||| | ||    
T  20129399 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 20129300  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  20129299 accgcccatg 20129290  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 36382428 - 36382528
Alignment:
Q  6 ttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctagaaccgc 105  Q
    |||||||||||||||||||  ||||| |||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  36382428 ttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgc 36382527  T
Q  106 c 106  Q
    |    
T  36382528 c 36382528  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13012277 - 13012165
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| ||||||||||||||||||||| |||  | | ||||||||||||||||| ||||||| |||||||||||||||||||||| | ||| | ||    
T  13012277 tttctttttataaatgtgttaatgagctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 13012178  T
Q  101 accgcccatggtt 113  Q
    |||||||||||||    
T  13012177 accgcccatggtt 13012165  T

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Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 17511312 - 17511417
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| ||||||| | ||||||||| || ||||||||||||| ||||    
T  17511312 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtctgggcgaccg-ccagggtcgccatacggtaga 17511410  T
Q  101 accgccc 107  Q
    |||||||    
T  17511411 accgccc 17511417  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26439357 - 26439466
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| |||||||||||||| ||||||||||  ||| ||||||||||||||||| || |||| |||||||||||||||||||||| | ||| | ||    
T  26439357 tttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtgga 26439456  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  26439457 accgcccatg 26439466  T

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Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29319783 - 29319892
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| | ||||||||  ||| ||||||||||||||||| ||||||| | || |||||||| |||||| ||||||| ||||    
T  29319783 tttctttttgtaaatgtgttaatgggattttgggttgagtctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtcaccatacggtaga 29319882  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  29319883 accgcccatg 29319892  T

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Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 34407362 - 34407471
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| |||||||||||||| ||||||||||  ||| ||||||||||||||||| || |||| |||||||||||||||||||||| | ||| | ||    
T  34407362 tttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtgga 34407461  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  34407462 accgcccatg 34407471  T

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Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 40529104 - 40528996
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgac--cgcccggggtcgccatacgcta 98  Q
    |||||||||||||||||||||||||| |||| |||  ||||||||||||||||||||| ||||||| |||| ||||  ||||| ||||||||||||| ||    
T  40529104 tttctttttgtaaatgtgttaatgagtttttaggttgagtttaatgtgcaaaaattatcgatcgagtccggacgacctcgcccagggtcgccatacggta 40529005  T
Q  99 gaaccgccc 107  Q
    |||||||||    
T  40529004 gaaccgccc 40528996  T

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Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 47500862 - 47500753
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||  ||||||||||||||||||||| |||  ||| ||||||||||||||||| ||||||| |||||||||||||||||||||| | ||| | ||    
T  47500862 tttcttttcataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 47500763  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  47500762 accgcccatg 47500753  T

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Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 30216820 - 30216909
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| ||||||||| |||||||||||   || ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  30216820 tttctttttgtaagtgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 30216909  T

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Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 43143662 - 43143774
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||||||| |||||||||  ||||||||||  ||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  ||| |  |    
T  43143662 tttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaa 43143761  T
Q  101 accgcccatggtt 113  Q
    |||||||||||||    
T  43143762 accgcccatggtt 43143774  T

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Target: chr4; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 43355993 - 43355884
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| |||||||||||||| ||||||||||  ||| ||||||||||||||||| || |||| ||||||||| ||| |||||||| | ||| | ||    
T  43355993 tttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgctacacggtgga 43355894  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  43355893 accgcccatg 43355884  T

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Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 6690313 - 6690402
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||  ||||||||||   || ||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  6690313 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 6690402  T

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Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 45194261 - 45194178
Alignment:
Q  5 tttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcg 88  Q
    ||||||||| ||||||||||  |||||||||  ||||||||||||||||||||||||||||| |||||| | |||| |||||||    
T  45194261 tttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcg 45194178  T

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Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 3292974 - 3293060
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtc 87  Q
    ||||||||||||| |||||||||  ||||||||||   || ||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  3292974 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtc 3293060  T

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Target: chr4; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 5521199 - 5521131
Alignment:
Q  259 ccctttgaaaggctaaaactaaggtacaaaaaatcatttgaattttccatgaaaatcataacaaggaagt 328  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||||||||    
T  5521199 ccctttcaaaggctaaaactaaggtaaaaaaaaccatttgaattttcca-aaaaatcataacaaggaagt 5521131  T

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Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 42333854 - 42333942
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgc 89  Q
    ||||||||||||| |||||||||  ||||||||||  ||| ||||||||||||||||| ||| ||| |||| |||||||||||| ||||    
T  42333854 tttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgc 42333942  T

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Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 27363446 - 27363336
Alignment:
Q  5 tttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctagaaccg 104  Q
    ||||||||| |||||||||| ||||||||||   |  |||| ||||||||   | ||||||| ||||||||||||||| |||||||||||| || |||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  105 cccatggttat 115  Q
    ||| |||||||    
T  27363346 cccctggttat 27363336  T

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Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 10352962 - 10353051
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    |||| |||||||||||||||||||  ||||| |||   || ||||||||||||||||| ||| ||| ||||||||||||| |||||||||    
T  10352962 tttccttttgtaaatgtgttaatggactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgcc 10353051  T

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Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 48130055 - 48129978
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccg 78  Q
    ||||||||||||| |||||||||||||||||||||   || |||| |||||||||||| ||||||| |||| ||||||    
T  48130055 tttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcgaccg 48129978  T

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Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 50205155 - 50205244
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||  ||||||||||    | ||||||||||||||||| |||||||  |||||||||||||||| |||||    
T  50205155 tttctttttgtaagtgtgttaattggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgcc 50205244  T

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Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30077709 - 30077797
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgc 89  Q
    ||||||||||||||||||||||||| ||||| |||   || |||||||||||| |||| ||| ||| | ||||||||||||| ||||||    
T  30077709 tttctttttgtaaatgtgttaatgaactttttggttgggtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcgc 30077797  T

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Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30110045 - 30109958
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcg 88  Q
    ||||||||||||| ||||||||||  |||| || |   || ||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  30110045 tttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgtccggggtcg 30109958  T

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Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 26448138 - 26448053
Alignment:
Q  5 tttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||| ||||||||||  ||||||||| |  ||||||||||||||||||| ||||||| |||| ||| ||| ||| ||||||    
T  26448138 tttttgtaagtgtgttaatggacttttgggttagatttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgcc 26448053  T

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Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 29996061 - 29996144
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggg 84  Q
    |||||||| |||||||||||||||  ||||| |||  ||| |||||| |||||||||| ||||||| |||| |||||| |||||    
T  29996061 tttcttttcgtaaatgtgttaatggactttttggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgtccggg 29996144  T

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Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 48989417 - 48989330
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcg 88  Q
    ||||||||||||| ||||||||||  |||||| ||   |||||||||||||||||||| ||||||  ||||  |||||||||| ||||    
T  48989417 tttctttttgtaagtgtgttaatggacttttgagttgggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcg 48989330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 7769369 - 7769306
Alignment:
Q  49 caaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctagaaccgcccatggt 112  Q
    |||||||||| ||||||| ||||||||||||| |||||||||  ||| |  |||||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatggt 7769306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 6235576 - 6235515
Alignment:
Q  46 gtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctagaaccgccc 107  Q
    ||||||||||||| | ||||| ||| |||||||||| |  |||||||||| |||||||||||    
T  6235576 gtgcaaaaattatcggtcgagcccgagcgaccgcccagaatcgccatacggtagaaccgccc 6235515  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 44156740 - 44156683
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattat 58  Q
    ||||||||||||| |||||||||  ||||||||||   || |||||||||||||||||    
T  44156740 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattat 44156683  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 49908782 - 49908819
Alignment:
Q  53 aattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgcc 49908819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 5555576 - 5555467
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||| ||||||| ||||||||||  ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  5555576 tttctttttgtaaatgcgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtaga 5555477  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  5555476 accgcccatg 5555467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 3114174 - 3114284
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||| ||||    
T  3114174 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcaccatacggtaga 3114273  T
Q  101 accgcccatgg 111  Q
    |||||||||||    
T  3114274 accgcccatgg 3114284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 14777185 - 14777294
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| ||||||| ||||||||||||||||| |||| | ||| ||||    
T  14777185 tttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtaga 14777284  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  14777285 accgcccatg 14777294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 8394214 - 8394109
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||| |||||||||||||||||||  ||||| |||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  8394214 tttccttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtaga 8394115  T
Q  101 accgcc 106  Q
    ||||||    
T  8394114 accgcc 8394109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 36630905 - 36630800
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||||||||||||||||||  ||||| |||  ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||    
T  36630905 tttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccatacggtaga 36630806  T
Q  101 accgcc 106  Q
    ||||||    
T  36630805 accgcc 36630800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 34389134 - 34389223
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| ||||||||| |||||||||||   || ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  34389134 tttctttttgtaagtgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 34389223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33685653 - 33685564
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||| ||||||||||   |||||||||||||||||||| ||||||| ||| ||||| ||| |||||||||    
T  33685653 tttctttttgtaagtgtgttaatgggcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgcc 33685564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 35090257 - 35090177
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgccc 81  Q
    ||||||||||||| |||||||||  ||||||||||   || ||||||||||||||||||||||||| ||||||||||||||    
T  35090257 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8867809 - 8867898
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||||||| |||||  |||||||| |   || |||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  8867809 tttctttttgtaaatgtattaattggcttttggattgggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8867898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 40920081 - 40920151
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgg 71  Q
    |||||||||||||||||||||||  |||||||||| || | ||||||||||||||||| ||||||| ||||    
T  40920081 tttctttttgtaaatgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 40920151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 37002222 - 37002311
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||   ||||||| |   || ||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  37002222 tttctttttgtaagtgtgttaattgacttttggattgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgcc 37002311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 43184546 - 43184628
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccgg 83  Q
    ||||||||||||| | |||||||  |||||||||| |||| | ||| | ||||||||| ||||||| ||| ||||||||||||    
T  43184546 tttctttttgtaagtatgttaattggcttttgggttaagtctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccgg 43184628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 26624835 - 26624749
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattg-atcgagaccgggcgaccgcccggggt 86  Q
    ||||||||||||| ||||||||| | ||||||| |   || |||| |||||||||||| | |||||| || ||||||||||||||||    
T  26624835 tttctttttgtaagtgtgttaattaacttttggattgggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggt 26624749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 13818066 - 13817960
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||    
T  13818066 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtaga 13817967  T
Q  101 accgccc 107  Q
    |||||||    
T  13817966 accgccc 13817960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 10034016 - 10033910
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| ||||||| |||||||| || |||||||||||||||| ||||    
T  10034016 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtaga 10033917  T
Q  101 accgccc 107  Q
    |||||||    
T  10033916 accgccc 10033910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 36293699 - 36293809
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| |||||| |||||||||| ||||||| |||| ||||||| ||||||||||| ||| ||||    
T  36293699 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtaga 36293798  T
Q  101 accgcccatgg 111  Q
    |||||||||||    
T  36293799 accgcccatgg 36293809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 39434785 - 39434676
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||| ||||||||||||||||||| ||||||||||  ||| ||||||| ||||||||| ||||||| |||||||||||||| ||||||||| ||| ||||    
T  39434785 tttcattttgtaaatgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtaga 39434686  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  39434685 accgcccatg 39434676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 1776454 - 1776559
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||||||||||||||||||  ||||| |||  | |||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||| ||||    
T  1776454 tttctttttgtaaatgtgttaatggactttttggttgactttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcatacggtaga 1776553  T
Q  101 accgcc 106  Q
    ||||||    
T  1776554 accgcc 1776559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3155709 - 3155818
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| ||||||||||||||  ||||| |||  |||  |||||||||||||||||||||||| ||| ||||||||||||| |||||||||| ||||    
T  3155709 tttctttttataaatgtgttaatggacttttaggttgagtcgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgccatacgataga 3155808  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  3155809 accgcccatg 3155818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 39657584 - 39657694
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||  |||||| |||  |||||| | ||||||||||||   ||||    
T  39657584 tttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgccatatagtaga 39657683  T
Q  101 accgcccatgg 111  Q
    |||||||||||    
T  39657684 accgcccatgg 39657694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26283396 - 26283505
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| ||||||||||||||| ||||| |||  ||| ||||||||||||||||| ||||||| ||||||||||||||| |||||| | ||| | ||    
T  26283396 tttctttttataaatgtgttaatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtgga 26283495  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  26283496 accgcccatg 26283505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36291460 - 36291373
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcg 88  Q
    ||||||||||||||||||||||||| ||||| ||| |  | ||||||||||||||||||||||||  |||| ||||||||||| ||||    
T  36291460 tttctttttgtaaatgtgttaatgaacttttaggttagatctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcg 36291373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12278938 - 12279027
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||  || |||||||   || ||||||||||||||||| ||||||| ||||||||||||||||| |||||    
T  12278938 tttctttttgtaagtgtgttaattggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgcc 12279027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 17332629 - 17332718
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||  ||||||||||   || |||| |||||||||||| ||||||| |||||||| ||||||||||||||    
T  17332629 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgcc 17332718  T

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Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 31501794 - 31501883
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||  ||||||||||   || ||||||||||||||||| ||||||| |||||| | ||||||||||||||    
T  31501794 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgcc 31501883  T

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Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31680456 - 31680367
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||  ||||||||||   || ||||| | ||||||||| ||||||| |||||||||||||||||||||||    
T  31680456 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 31680367  T

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Target: chr5; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 16155086 - 16155015
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccggg 72  Q
    ||||||||| |||||||||||||| ||||||||||  ||| ||||||||||||||||| ||||||| |||||    
T  16155086 tttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 16155015  T

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Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 19986028 - 19985934
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacg 95  Q
    |||||||||||||||||| |||||  |||||||||  | | ||||||||||||||||| |||||||  ||| |||||||||| ||||| ||||||    
T  19986028 tttctttttgtaaatgtgctaatggacttttgggttgaatctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcgtcatacg 19985934  T

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Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 37254730 - 37254641
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||   |||||||||   || ||||||||||||||||| ||||||| | ||||||||||| |||||||||    
T  37254730 tttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgcc 37254641  T

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Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43068966 - 43068896
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgg 71  Q
    ||||||||||||||||||||||||  |||||||||   || ||||||| ||||||||||||||||| ||||    
T  43068966 tttctttttgtaaatgtgttaatggacttttgggttgggtctaatgtgaaaaaattattgatcgagcccgg 43068896  T

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Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16333954 - 16334011
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattat 58  Q
    |||||||||||||||||||||||| ||||||||||  | | |||||||||||||||||    
T  16333954 tttctttttgtaaatgtgttaatgggcttttgggttgaatctaatgtgcaaaaattat 16334011  T

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Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33430410 - 33430335
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgac 76  Q
    ||||||||||||| |||||||||  ||||||||||   || ||||| ||||||||||| ||||||| |||||||||    
T  33430410 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 14316694 - 14316641
Alignment:
Q  54 attattgatcgagaccgggcgaccgcccggggtcgccatacgctagaaccgccc 107  Q
    ||||| ||||||| | ||||||||||||| | |||||||||| |||||||||||    
T  14316694 attatcgatcgagcctgggcgaccgcccgagatcgccatacggtagaaccgccc 14316641  T

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Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 34948836 - 34948945
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| ||||||| | ||||||||||| |||||||||||||| ||||    
T  34948836 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtaga 34948935  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  34948936 accgcccatg 34948945  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 398706 - 398597
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| ||||||||||||||||||||| |||  ||| ||||||||||||||||| ||||||| |||||||||||||||||||||| | ||| | ||    
T  398706 tttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 398607  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  398606 accgcccatg 398597  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13837910 - 13837801
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||| ||| ||||||||||  ||| |||||| |||||||||| ||||||  ||| |||| ||||||||||||||||||| ||||    
T  13837910 tttctttttgtaaatgtgttgatgtgcttttgggttgagtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgccatacggtaga 13837811  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  13837810 accgcccatg 13837801  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 18339195 - 18339106
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||  |||||| | |   || ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18339195 tttctttttgtaagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 31028445 - 31028531
Alignment:
Q  4 ctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    |||||||||||||||||||||||||||| |||    | ||||||||||||||||| ||||||| |||||| ||||| ||||||||||    
T  31028445 ctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgcc 31028531  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 29743372 - 29743289
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggg 84  Q
    ||||||| ||||||||||||||||| ||||| |||   || ||||||||||||||||| ||| ||| |||||| ||||||||||    
T  29743372 tttctttctgtaaatgtgttaatgaactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcaaccgcccggg 29743289  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28996819 - 28996730
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||   ||||| |||   || ||||| ||||||||||| |||||||  ||||||||||||||||||||||    
T  28996819 tttctttttgtaagtgtgttaattgacttttaggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgcc 28996730  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 24697899 - 24697984
Alignment:
Q  5 tttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||| |||||||||| ||||||||||   |  ||||||| ||||||||| ||| ||| ||||||||  | |||||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgcc 24697984  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33229414 - 33229487
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcg 74  Q
    |||||||||| |||||||||||||  |||||||||   || |||||| ||||||| || ||||||| |||||||    
T  33229414 tttctttttggaaatgtgttaatggacttttgggttgggtctaatgtacaaaaatgatcgatcgagcccgggcg 33229487  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 13647053 - 13647017
Alignment:
Q  54 attattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgcc 13647017  T

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Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 22968522 - 22968631
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| ||||||| |||| ||||||||||||||||| | ||| ||||    
T  22968522 tttctttttgtaaatgtgttaatgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgctacacggtaga 22968621  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  22968622 accgcccatg 22968631  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 34084200 - 34084305
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||||||||||||||||||  ||||| |||  | ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  34084200 tttctttttgtaaatgtgttaatggactttttggttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgccatacggtaga 34084299  T
Q  101 accgcc 106  Q
    ||||||    
T  34084300 accgcc 34084305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6269504 - 6269613
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| ||||||| |||| |||||||||||| |||| | ||| ||||    
T  6269504 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgctacacggtaga 6269603  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  6269604 accgcccatg 6269613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 39771879 - 39771770
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| |||||||||||||| ||||||||||  ||| ||||||||||||||||| || |||| |||||||||||||||||||||| | ||| | ||    
T  39771879 tttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtgga 39771780  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  39771779 accgcccatg 39771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 27935267 - 27935177
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcca 91  Q
    ||||||||||||| |||||||||||||||||||||   |||||||||||||||||||| ||||||| ||||||||| |||| |||| ||||    
T  27935267 tttctttttgtaagtgtgttaatgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgcca 27935177  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 19390235 - 19390126
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||   ||||| |||  ||| ||||||||||||||||| ||||||  |||| ||||||||||||||||||| ||| ||||    
T  19390235 tttctttttgtaaatgtgttaatagacttttaggttgagtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgccacacggtaga 19390136  T
Q  101 accgcccatg 110  Q
    ||| ||||||    
T  19390135 acctcccatg 19390126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 11018290 - 11018401
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||||||| |||||||||  ||||||||||  ||| ||||||||||||||||| ||||||| | |||||||||||||| ||||||  ||| |  |    
T  11018290 tttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaa 11018389  T
Q  101 accgcccatggt 112  Q
    ||||||||||||    
T  11018390 accgcccatggt 11018401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 40081818 - 40081922
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||||||||||||||||||||||||| |||  ||| |||||| |||||||||| ||||||| ||||||||||  || | ||||||||||| ||||    
T  40081818 tttctttttgtaaatgtgttaatgagctttt-ggttgagtctaatgttcaaaaattatcgatcgagcccgggcgacc-tccagagtcgccatacggtaga 40081915  T
Q  101 accgccc 107  Q
    |||||||    
T  40081916 accgccc 40081922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45183070 - 45182981
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||  ||||||||||   || ||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  45183070 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 45182981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6503647 - 6503756
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||||||| |||| ||||  ||||||||||  ||| |||| ||||||||| || ||||||| |||||||||||||||||||||||  ||| |  |    
T  6503647 tttctttttgtaagtgtgctaattggcttttgggttgagtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaa 6503746  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  6503747 accgcccatg 6503756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 6930972 - 6931061
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    |||||||||||||||||||||||  ||||||||||    | ||||| ||||||||||| ||||||| ||||||||||| |||||||||||    
T  6930972 tttctttttgtaaatgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 6931061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33041042 - 33040953
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| ||||||||| |||||||||||   || |||| ||||||||||||  |||||| ||| |||||||||||||||||||    
T  33041042 tttctttttgtaagtgtgttaattagcttttgggttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgcc 33040953  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45335963 - 45335875
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||||||||||||||| ||||| |||   || ||||||| ||||||||| ||| ||| ||||||||||||||| |||||||    
T  45335963 tttctttttgtaaatgtgttaatga-ctttttggttgggtctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgcc 45335875  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 22922209 - 22922141
Alignment:
Q  38 agtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctagaaccgcc 106  Q
    |||||||||||||||||| || ||||||| ||| ||||||||||||| |||||||||| | ||||||||    
T  22922209 agtttaatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgcc 22922141  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 19565579 - 19565668
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||||||||||||||   |||| |||   || ||||||||||||||||| ||| ||  ||||||||||||||||| |||||    
T  19565579 tttctttttgtaaatgtgttaatggattttttggttgggtctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgcc 19565668  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5135358 - 5135293
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgag 66  Q
    ||||||||||||| ||||||||||||||||| |||   || |||||| ||||||| || |||||||    
T  5135358 tttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcgatcgag 5135293  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 5354757 - 5354709
Alignment:
Q  42 taatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    |||||||  |||||||  ||||||| |||||||||||||||||||||||    
T  5354757 taatgtgagaaaattaaggatcgagcccgggcgaccgcccggggtcgcc 5354709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7433534 - 7433425
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| |||||||  |||||||||||||||||| |||||||| ||||    
T  7433534 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgccatacggtaga 7433435  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  7433434 accgcccatg 7433425  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 26144344 - 26144235
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| ||||||||||||||||||||| |||  ||| ||||||||||||||||| ||||||| |||||||||||||||||||||| | ||| | ||    
T  26144344 tttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 26144245  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  26144244 accgcccatg 26144235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 42311019 - 42311125
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||| | ||||||||||  ||| ||||||||||||||||| ||||||| |||||||| || | |||||||||||||| ||||    
T  42311019 tttctttttgtaaatgtgttaacgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgccatacggtaga 42311118  T
Q  101 accgccc 107  Q
    |||||||    
T  42311119 accgccc 42311125  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 32982134 - 32982236
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||||||||| |||||||| |||||| |||   || ||||||||||||||||| ||||| | ||| |||||||||||||||||||||||| ||||    
T  32982134 tttctttttgtaaatatgttaatgggcttttaggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgccatacggtaga 32982233  T
Q  101 acc 103  Q
    |||    
T  32982234 acc 32982236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23313328 - 23313218
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaa-aaattattgatcgagaccgggcgaccgcccggggtcgccatacgctag 99  Q
    ||||||||||||||||||||||||| |||||  ||  ||| |||||||||| |||| ||  |||||| |||||| |||||||| | |||||||||| |||    
T  23313328 tttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccgagatcgccatacggtag 23313229  T
Q  100 aaccgcccatg 110  Q
    |||||||||||    
T  23313228 aaccgcccatg 23313218  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 3829073 - 3828988
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggt 86  Q
    ||||||||||||| ||||||||||| |||||||||   |||||||||||||||||||| ||||||  ||| ||||||| |||||||    
T  3829073 tttctttttgtaagtgtgttaatgaacttttgggttgggtttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggt 3828988  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35907641 - 35907552
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||  ||||  ||||||||||   || ||||||||||||||||| |||| || ||||||||||||||| |||||||    
T  35907641 tttctttttgtaagtgtactaattggcttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgcc 35907552  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41972353 - 41972440
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgc 89  Q
    ||||||||||||| |||||||||  |||||| |||    | ||||||||||||||||| ||||||| || |||||||||||||||||||    
T  41972353 tttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcgatcgag-ccaggcgaccgcccggggtcgc 41972440  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 17445402 - 17445313
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||   |||||||||    | |||||| ||||||||||||||| || ||||||||||||  |||||||||    
T  17445402 tttctttttgtaagtgtgttaattgacttttgggttggatctaatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgcc 17445313  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 321455 - 321536
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccg 82  Q
    ||||||||||||| ||||||||||  |||||||||    | |||||  |||||||||| ||||||| |||| ||||||||||    
T  321455 tttctttttgtaactgtgttaatggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgaccgcccg 321536  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 29580258 - 29580317
Alignment:
Q  159 atgccttttaacttcaactattatttagtactagatctcacaccacgacaaaacgtcacac 219  Q
    |||||||||| ||| ||||||||||||||| |  ||||||||||||| |||||| ||||||    
T  29580258 atgccttttacctt-aactattatttagtattgaatctcacaccacggcaaaacttcacac 29580317  T

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Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29728464 - 29728570
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||| |||| |||||||  |||||||||| |||||||||||||||| ||||    
T  29728464 tttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgccatacggtaga 29728563  T
Q  101 accgccc 107  Q
    |||||||    
T  29728564 accgccc 29728570  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 3648872 - 3648984
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||| ||||||||| ||||||| ||||||||| | || || |||||||||| ||||    
T  3648872 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgactgtcccggatcgccatacggtaga 3648971  T
Q  101 accgcccatggtt 113  Q
    ||||||| |||||    
T  3648972 accgcccctggtt 3648984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 15838370 - 15838270
Alignment:
Q  6 ttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctagaaccgc 105  Q
    |||||||||||||||||||  ||||| |||  |||||||||||||||||||||  |||||| ||||| |||||||||||||||||||||| |||||||||    
T  15838370 ttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgccatacggtagaaccgc 15838271  T
Q  106 c 106  Q
    |    
T  15838270 c 15838270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 39914600 - 39914495
Alignment:
Q  5 tttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctagaaccg 104  Q
    ||||| ||||||||||||||||||||| |||  ||| ||||||||||||||||| ||||||| |||||||||||||||||||||| | ||| | ||||||    
T  39914600 tttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccg 39914501  T
Q  105 cccatg 110  Q
     |||||    
T  39914500 tccatg 39914495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 16788103 - 16788188
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggt 86  Q
    ||||||||||||| |||||||||  ||||||||||  ||| ||||||||||||||||| ||||||| |||||||||||||||||||    
T  16788103 tttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggt 16788188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34136903 - 34136993
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcca 91  Q
    ||||||||||||| |||||||||   |||||||||  ||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  34136903 tttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgcca 34136993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4404097 - 4404008
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| | |||||||  ||||||||||  ||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||    
T  4404097 tttctttttgtaagtatgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgcc 4404008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 36408640 - 36408551
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||||||||||||||  |||||||||    | ||||||||||||||||| ||||||| ||||||||||||||| |||||||    
T  36408640 tttctttttgtaaatgtgttaatggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgcc 36408551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 23402197 - 23402108
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||  ||||||||||   || |||| |||||| ||||| ||||||| |||||||||||||||||||||||    
T  23402197 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgcc 23402108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2729274 - 2729363
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||| ||| |||||||||| |||||||| |    ||||||||| ||||||||| ||||||| ||||||| |||||||||||||||    
T  2729274 tttctttttataagtgtgttaatgggcttttggattggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgcc 2729363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3435358 - 3435285
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcg 74  Q
    ||||||||||||| |||||||||| | ||||||||   || ||||||||||||||||| |||| || |||||||    
T  3435358 tttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcg 3435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9877309 - 9877252
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattat 58  Q
    ||||||||||||| |||||||||   ||||||||| | || |||||||||||||||||    
T  9877309 tttctttttgtaagtgtgttaattgacttttgggttaggtctaatgtgcaaaaattat 9877252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 17931 - 17820
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    |||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| ||||||| |||| ||| ||| ||||||||||| ||| ||||    
T  17931 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtaga 17832  T
Q  101 accgcccatggt 112  Q
    ||||||||||||    
T  17831 accgcccatggt 17820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 480535 - 480644
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| ||||||||||||||||||||| |||  ||| ||||||||||||||||| ||||||| |||||||||||||||||||||| | ||| | ||    
T  480535 tttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 480634  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  480635 accgcccatg 480644  T

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Target: scaffold2142 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 611 - 499
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgccatacgctaga 100  Q
    ||||||||| ||||||||||||||||||||| |||  ||| ||||||||||||||||| ||||||| ||||||||||||||||| |||| | ||| | ||    
T  611 tttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtgga 512  T
Q  101 accgcccatggtt 113  Q
    |||||||||||||    
T  511 accgcccatggtt 499  T

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Target: scaffold0502 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5319 - 5230
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||  |||||| | |   || ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5319 tttctttttgtaagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

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Target: scaffold0154 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31569 - 31480
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgggcgaccgcccggggtcgcc 90  Q
    ||||||||||||| |||||||||| ||||||||||   || || |||||||||||||| ||||||| ||||||||||| | |||||||||    
T  31569 tttctttttgtaagtgtgttaatgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgcc 31480  T

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Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 53014 - 52944
Alignment:
Q  1 tttctttttgtaaatgtgttaatgagcttttgggtcaagtttaatgtgcaaaaattattgatcgagaccgg 71  Q
    |||||||||||||||||||||||  |||||||||| || | ||||||||||||||||| ||||||| ||||    
T  53014 tttctttttgtaaatgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 52944  T

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