View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_33 (Length: 395)
Name: NF1687_low_33
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 137 - 363
Target Start/End: Original strand, 5651988 - 5652214
Alignment:
| Q |
137 |
acttgattattaaattaaatagttagagatttgatcgctgacttttctgtatattga---tctgattgataagagaaagtgtaccacaagtttttcttaa |
233 |
Q |
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| T |
5651988 |
acttgattattaaattaaatagttagagatttgatcgttgacttttctgtatattgaaaatctgattgataagagaaagtgtaccacaagttttttttaa |
5652087 |
T |
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| Q |
234 |
agagattaatcatctcgatgaaatttttgtgtagttgacaaattaaaaacttgatcgctgacttttgtgtatattgaaaatctgattgataagagatgtt |
333 |
Q |
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| T |
5652088 |
aaagattaatcatctcgatgaaa--tttatgtacttgacaaattaaaaacttgatcgctgacttttgtgtatattaaaaatctga-tgataagagaagtt |
5652184 |
T |
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| Q |
334 |
gtaccacaagtttttcttagagagattaat |
363 |
Q |
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| T |
5652185 |
gtaccacaagtttttcttagagagattaat |
5652214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 5652018 - 5652113
Alignment:
| Q |
284 |
ttgatcgctgacttttgtgtatattgaaaatctgattgataagagatgttgtaccacaagtttttcttagagagattaataatctcagatgaaattt |
380 |
Q |
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| T |
5652018 |
ttgatcgttgacttttctgtatattgaaaatctgattgataagagaaagtgtaccacaagttttttttaaaaagattaatcatctc-gatgaaattt |
5652113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 5651753 - 5651806
Alignment:
| Q |
28 |
cttcgtaaaaacaagttgaacaacaaattttagtataaaatcatgtttagactc |
81 |
Q |
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| T |
5651753 |
cttcgtaaaatcaagttgaacaacaaattttagtataaaatcatgtttagactc |
5651806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 5652136 - 5652235
Alignment:
| Q |
167 |
ttgatcgctgacttttctgtatattga---tctgattgataagagaaagtgtaccacaagtttttcttaaagagattaatcatctcgatgaaatttttgt |
263 |
Q |
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| T |
5652136 |
ttgatcgctgacttttgtgtatattaaaaatctgat-gataagagaagttgtaccacaagtttttcttagagagattaatc-tcatgatgaaatttttgt |
5652233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 22383311 - 22383349
Alignment:
| Q |
64 |
aaaatcatgtttagactcaaaaactataaattctaactt |
102 |
Q |
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| T |
22383311 |
aaaatcatgtttagactcaaaaactacaaatcctaactt |
22383349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 7298328 - 7298392
Alignment:
| Q |
42 |
gttgaacaacaaattttagtataaaatcatgtttagactcaaaaactataaattctaacttcaag |
106 |
Q |
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| T |
7298328 |
gttgaacaataaatttcagttaaaaatcacgattagactcaaaaactacaaatcctagcttcaag |
7298392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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